| Improved reference genome for the domestic horse increases assembly contiguity and composition TS Kalbfleisch, ES Rice, MS DePriest, BP Walenz, MS Hestand, ... Communications Biology 1 (1), 197, 2018 | 254 | 2018 |
| Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment CA Trujillo, ES Rice, NK Schaefer, IA Chaim, EC Wheeler, AA Madrigal, ... Science 371 (6530), eaax2537, 2021 | 142 | 2021 |
| Natural selection shaped the rise and fall of passenger pigeon genomic diversity GGR Murray, AER Soares, BJ Novak, NK Schaefer, JA Cahill, AJ Baker, ... Science 358 (6365), 951-954, 2017 | 142 | 2017 |
| New Approaches for Genome Assembly and Scaffolding ES Rice, RE Green Annual review of animal biosciences 7, 17-40, 2019 | 124 | 2019 |
| A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution WC Warren, TE Boggs, R Borowsky, BM Carlson, E Ferrufino, JB Gross, ... Nature communications 12 (1), 1-12, 2021 | 80 | 2021 |
| A 4,103 marker integrated physical and comparative map of the horse genome T Raudsepp, A Gustafson-Seabury, K Durkin, ML Wagner, G Goh, ... Cytogenetic and genome research 122 (1), 28-36, 2008 | 69 | 2008 |
| Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle ES Rice, S Koren, A Rhie, MP Heaton, TS Kalbfleisch, T Hardy, ... GigaScience 9 (4), giaa029, 2020 | 66* | 2020 |
| Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling ES Rice, S Kohno, JS John, S Pham, J Howard, LF Lareau, BL O'Connell, ... Genome Research 27 (5), 686-696, 2017 | 47 | 2017 |
| Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome RJ Edwards, MA Field, JM Ferguson, O Dudchenko, J Keilwagen, ... BMC genomics 22 (1), 1-19, 2021 | 39 | 2021 |
| Multiple chicken (Gallus gallus) genome references to advance genetic variation studies.: Single haplotype chicken genome assemblies. W Warren, O Fedrigo, A Tracey, AS Mason, G Formenti, P Francesco, ... Cytogenetic and Genome Research, 2023 | 27* | 2023 |
| rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control AA Schäffer, ES Rice, W Cook, R Agarwala Bioinformatics 23 (9), 1156-1158, 2007 | 24 | 2007 |
| Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution KR Bredemeyer, LD Hillier, AJ Harris, GM Hughes, NM Foley, C Lawless, ... Nature Genetics 55 (11), 1953-1963, 2023 | 16 | 2023 |
| A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants ES Rice, A Alberdi, J Alfieri, G Athrey, JR Balacco, P Bardou, H Blackmon, ... BMC Biology 21, 267, 2023 | 15 | 2023 |
| The immune cell landscape and response of Marek’s disease resistant and susceptible chickens infected with Marek’s disease virus WC Warren, ES Rice, A Meyer, CJ Hearn, A Steep, HD Hunt, MS Monson, ... Scientific Reports 13 (1), 1-15, 2023 | 12 | 2023 |
| A second unveiling: haplotig masking of the eastern oyster genome improves population-level inference JB Puritz, X Guo, M Hare, Y He, LD Hillier, S Jin, M Liu, K Lotterhos, ... Molecular Ecology Resources 2023 (00), 1-18, 2023 | 10 | 2023 |
| Transcriptomic Changes of Murine Visceral Fat Exposed to Intermittent Hypoxia at Single Cell Resolution A Khalyfa, W Warren, J Andrade, CA Bottoms, ES Rice, R Cortese, ... International Journal of Molecular Sciences 22 (1), 261, 2021 | 9 | 2021 |
| High resolution genomes of multiple Xiphophorus species provide new insights into microevolution, hybrid incompatibility, and epistasis Y Lu, E Rice, K Du, S Kneitz, M Naville, C Dechaud, JN Volff, M Boswell, ... Genome Research 33 (4), 557-571, 2023 | 7 | 2023 |
| Astyanax mexicanus surface and cavefish chromosome-scale assemblies for trait variation discovery WC Warren, ES Rice, X Maggs, E Roback, A Keene, F Martin, D Ogeh, ... bioRxiv, 2023.11. 16.567450, 2023 | 6 | 2023 |
| Discordant Genome Assemblies Drastically Alter the Interpretation of Single-Cell RNA Sequencing Data Which Can Be Mitigated by a Novel Integration Method HG Potts, ME Lemieux, ES Rice, W Warren, RP Choudhury, ... Cells 11 (4), 608, 2022 | 5 | 2022 |
| A chromosome-scale fishing cat reference genome for the evaluation of potential germline risk variants RA Carroll, ES Rice, WJ Murphy, LA Lyons, F Thibaud-Nissen, LM Coghill, ... Scientific Reports 14 (1), 8073, 2024 | 2* | 2024 |
