| Environmental DNA methods for ecological monitoring and biodiversity assessment in estuaries RP Nagarajan, M Bedwell, AE Holmes, T Sanches, S Acuña, M Baerwald, ... Estuaries and Coasts 45 (7), 2254-2273, 2022 | 61 | 2022 |
| Poor data stewardship will hinder global genetic diversity surveillance RH Toczydlowski, L Liggins, MR Gaither, TJ Anderson, RL Barton, ... Proceedings of the National Academy of Sciences 118 (34), e2107934118, 2021 | 46 | 2021 |
| Zooplankton dynamics in the Cache Slough complex of the upper San Francisco Estuary W Kimmerer, TR Ignoffo, B Bemowski, J Modéran, A Holmes, ... San Francisco Estuary and Watershed Science 16 (3), 2018 | 31 | 2018 |
| Importance of timely metadata curation to the global surveillance of genetic diversity ED Crandall, RH Toczydlowski, L Liggins, AE Holmes, M Ghoojaei, ... Conservation Biology 37 (4), e14061, 2023 | 26 | 2023 |
| Evaluating environmental DNA detection of a rare fish in turbid water using field and experimental approaches AE Holmes, MR Baerwald, J Rodzen, BM Schreier, B Mahardja, AJ Finger PeerJ 12, e16453, 2024 | 11* | 2024 |
| Phytoplankton prey of an abundant estuarine copepod identified in situ using DNA metabarcoding AE Holmes, WJ Kimmerer Journal of Plankton Research 44 (2), 316-332, 2022 | 6 | 2022 |
| High-throughput sequencing reveals unexpected phytoplankton prey of an estuarine copepod (MS Thesis) AE Holmes | 6* | 2018 |
| Operationalizing Non-invasive Genetic Approaches for Conservation in Aquatic and Wetland Ecosystems (PhD Dissertation) AE Holmes UC Davis, 2023 | | 2023 |
| Knowing Your Limits: Environmental DNA Detection in a Tidal Estuary Using Caged Fish A Holmes, M Bedwell, G Auringer, M Baerwald, J Rodzen, B Schreier, ... American Fisheries Society & The Wildlife Society 2019 Joint Annual Conference, 2019 | | 2019 |
| Environmental DNA (eDNA) Protocol Development for Rare Fish in a Turbid Estuarine Environment A Holmes, M Baerwald, T Sommer, B Schreier, B Mahardja, J Rodzen, ... 148th Annual Meeting of the American Fisheries Society, 2018 | | 2018 |
| Using environmental DNA (eDNA) to detect endangered delta smelt in the San Francisco Estuary A Holmes, A Benjamin, A Schreier, B Schreier, B Mahardja, T Sommer, ... 2017 ESA Annual Meeting (August 6--11), 2017 | | 2017 |
| Distribution of Acartia spp. in central San Francisco Bay and San Pablo Bay is not related to temperature and salinity variation. DT Franklin, AE Holmes, C Craig, CS Cohen INTEGRATIVE AND COMPARATIVE BIOLOGY 55, E258-E258, 2015 | | 2015 |
| Genetic and morphological comparisons of planktonic Acartia spp.(Crustacea: Copepoda) in San Francisco Estuary reveal cryptic genetic diversity AE Holmes, D Franklin, C Craig, AM Slaughter, TR Ignoffo, WJ Kimmerer, ... INTEGRATIVE AND COMPARATIVE BIOLOGY 55, E275-E275, 2015 | | 2015 |