| Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly K Zhalnina, KB Louie, Z Hao, N Mansoori, UN Da Rocha, S Shi, H Cho, ... Nature microbiology 3 (4), 470-480, 2018 | 1668 | 2018 |
| The interconnected rhizosphere: high network complexity dominates rhizosphere assemblages S Shi, EE Nuccio, ZJ Shi, Z He, J Zhou, MK Firestone Ecology letters 19 (8), 926-936, 2016 | 962 | 2016 |
| Effects of selected root exudate components on soil bacterial communities S Shi, AE Richardson, M O'Callaghan, KM DeAngelis, EE Jones, ... FEMS microbiology ecology 77 (3), 600-610, 2011 | 464 | 2011 |
| Successional trajectories of rhizosphere bacterial communities over consecutive seasons S Shi, E Nuccio, DJ Herman, R Rijkers, K Estera, J Li, UN Da Rocha, Z He, ... MBio 6 (4), 10.1128/mbio. 00746-15, 2015 | 276 | 2015 |
| Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon EP Starr, S Shi, SJ Blazewicz, AJ Probst, DJ Herman, MK Firestone, ... Microbiome 6, 1-12, 2018 | 149 | 2018 |
| In situ sampling of low molecular weight organic anions from rhizosphere of radiata pine (Pinus radiata) grown in a rhizotron system S Shi, L Condron, S Larsen, AE Richardson, E Jones, J Jiao, ... Environmental and Experimental Botany 70 (2-3), 131-142, 2011 | 74 | 2011 |
| Fungal-bacterial cooccurrence patterns differ between arbuscular mycorrhizal fungi and nonmycorrhizal fungi across soil niches MM Yuan, A Kakouridis, E Starr, N Nguyen, S Shi, J Pett-Ridge, E Nuccio, ... MBio 12 (2), 10.1128/mbio. 03509-20, 2021 | 58 | 2021 |
| Changes to the structure of Sphingomonas spp. communities associated with biodegradation of the herbicide isoproturon in soil S Shi, GD Bending FEMS microbiology letters 269 (1), 110-116, 2007 | 53 | 2007 |
| Plant roots alter microbial functional genes supporting root litter decomposition S Shi, DJ Herman, Z He, J Pett-Ridge, L Wu, J Zhou, MK Firestone Soil Biology and Biochemistry 127, 90-99, 2018 | 52 | 2018 |
| Rhizosphere carbon turnover from cradle to grave: the role of microbe–plant interactions J Pett-Ridge, S Shi, K Estera-Molina, E Nuccio, M Yuan, R Rijkers, ... Rhizosphere biology: interactions between microbes and plants, 51-73, 2021 | 50 | 2021 |
| Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystem J Xiong, Z He, S Shi, A Kent, Y Deng, L Wu, JD Van Nostrand, J Zhou Scientific reports 5 (1), 9316, 2015 | 47 | 2015 |
| Stable-isotope-informed, genome-resolved metagenomics uncovers potential cross-kingdom interactions in rhizosphere soil EP Starr, S Shi, SJ Blazewicz, BJ Koch, AJ Probst, BA Hungate, ... Msphere 6 (5), 10.1128/msphere. 00085-21, 2021 | 45 | 2021 |
| Biodegradation of the herbicide mecoprop-p with soil depth and its relationship with class III tfdA genes MS Rodríguez-Cruz, J Bælum, LJ Shaw, SR Sørensen, S Shi, T Aspray, ... Soil Biology and Biochemistry 42 (1), 32-39, 2010 | 35 | 2010 |
| Investigation of organic anions in tree root exudates and rhizosphere microbial communities using in situ and destructive sampling techniques S Shi, M O’Callaghan, EE Jones, AE Richardson, C Walter, A Stewart, ... Plant and soil 359, 149-163, 2012 | 30 | 2012 |
| Microbial functional genes commonly respond to elevated carbon dioxide Z He, Y Deng, M Xu, J Li, J Liang, J Xiong, H Yu, B Wu, L Wu, K Xue, ... Environment international 144, 106068, 2020 | 27 | 2020 |
| Impacts of soil‐borne disease on plant yield and farm profit in dairying soils BEA Dignam, SDG Marshall, AJ Wall, YF Mtandavari, EM Gerard, E Hicks, ... Journal of Sustainable Agriculture and Environment 1 (1), 16-29, 2022 | 20 | 2022 |
| Challenges in assessing links between root exudates and the structure and function of soil microbial communities S Shi, AE Richardson, M O'Callaghan, M Firestone, L Condron Molecular microbial ecology of the rhizosphere 1, 125-135, 2013 | 20 | 2013 |
| Increasing biological nitrogen fixation by white clover-rhizobia symbiosis S Shi, L Villamizar, E Gerard, C Ronson, S Wakelin, R Ballard, ... Journal of New Zealand Grasslands, 231-234, 2019 | 9 | 2019 |
| Impacts of pasture species and ruminant urine on N2O emissions and nitrogen transforming microbial communities in soil mesocosms MD des Roseaux, S Shi, AM Duff, FP Brennan, L Condron, JA Finn, ... New Zealand Journal of Agricultural Research 65 (1), 42-62, 2022 | 8 | 2022 |
| Stable isotope informed genome-resolved metagenomics uncovers potential trophic interactions in rhizosphere soil EP Starr, S Shi, SJ Blazewicz, BJ Koch, AJ Probst, BA Hungate, ... bioRxiv, 2020.08. 21.262063, 2020 | 7 | 2020 |
Alan E RichardsonCSIRO Agriculture & Foodcsiro.au üzerinde doğrulanmış e-posta adresine sahip