| Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis P Nicolas, U Mäder, E Dervyn, T Rochat, A Leduc, N Pigeonneau, ... Science 335 (6072), 1103-1106, 2012 | 1033 | 2012 |
| Systems biology in practice: concepts, implementation and application E Klipp, R Herwig, A Kowald, C Wierling, H Lehrach John Wiley & Sons, 2005 | 917 | 2005 |
| Minimum information requested in the annotation of biochemical models (MIRIAM) NL Novère, A Finney, M Hucka, US Bhalla, F Campagne, J Collado-Vides, ... Nature biotechnology 23 (12), 1509-1515, 2005 | 719 | 2005 |
| A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008 | 698 | 2008 |
| Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress M Ralser, MM Wamelink, A Kowald, B Gerisch, G Heeren, EA Struys, ... Journal of biology 6, 1-18, 2007 | 688 | 2007 |
| Systems biology: a textbook E Klipp, W Liebermeister, C Wierling, A Kowald John Wiley & Sons, 2016 | 642 | 2016 |
| Integrative model of the response of yeast to osmotic shock E Klipp, B Nordlander, R Krüger, P Gennemark, S Hohmann Nature biotechnology 23 (8), 975-982, 2005 | 538 | 2005 |
| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 417 | 2020 |
| Triple-negative breast cancer: present challenges and new perspectives F Podo, LMC Buydens, H Degani, R Hilhorst, E Klipp, IS Gribbestad, ... Molecular oncology 4 (3), 209-229, 2010 | 407 | 2010 |
| Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism JM Buescher, W Liebermeister, M Jules, M Uhr, J Muntel, E Botella, ... Science 335 (6072), 1099-1103, 2012 | 327 | 2012 |
| Bringing metabolic networks to life: convenience rate law and thermodynamic constraints W Liebermeister, E Klipp Theoretical Biology and Medical Modelling 3, 1-13, 2006 | 298 | 2006 |
| Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems A Raue, B Steiert, M Schelker, C Kreutz, T Maiwald, H Hass, J Vanlier, ... Bioinformatics 31 (21), 3558-3560, 2015 | 262 | 2015 |
| Estimation of immune cell content in tumour tissue using single-cell RNA-seq data M Schelker, S Feau, J Du, N Ranu, E Klipp, G MacBeath, B Schoeberl, ... Nature communications 8 (1), 2032, 2017 | 261 | 2017 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 254 | 2020 |
| Mathematical modeling of intracellular signaling pathways E Klipp, W Liebermeister BMC neuroscience 7, 1-16, 2006 | 235 | 2006 |
| Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation W Liebermeister, J Uhlendorf, E Klipp Bioinformatics 26 (12), 1528-1534, 2010 | 183 | 2010 |
| Selective benefits of damage partitioning in unicellular systems and its effects on aging N Erjavec, M Cvijovic, E Klipp, T Nyström Proceedings of the National Academy of Sciences 105 (48), 18764-18769, 2008 | 174 | 2008 |
| Minimum information about a simulation experiment (MIASE) D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ... PLoS computational biology 7 (4), e1001122, 2011 | 172 | 2011 |
| Prediction of temporal gene expression: Metabolic optimization by re‐distribution of enzyme activities E Klipp, R Heinrich, HG Holzhütter European journal of biochemistry 269 (22), 5406-5413, 2002 | 160 | 2002 |
| Modelling the dynamics of the yeast pheromone pathway B Kofahl, E Klipp Yeast 21 (10), 831-850, 2004 | 151 | 2004 |
