Takip et
Andrew L Ferguson
Andrew L Ferguson
Associate Professor of Molecular Engineering, University of Chicago
uchicago.edu üzerinde doğrulanmış e-posta adresine sahip - Ana Sayfa
Başlık
Alıntı yapanlar
Alıntı yapanlar
Yıl
The value of antimicrobial peptides in the age of resistance
M Magana, M Pushpanathan, AL Santos, L Leanse, M Fernandez, ...
The lancet infectious diseases 20 (9), e216-e230, 2020
9282020
Promoting transparency and reproducibility in enhanced molecular simulations
Nature methods 16 (8), 670-673, 2019
8122019
Investigating the optimal size of anticancer nanomedicine
L Tang, X Yang, Q Yin, K Cai, H Wang, I Chaudhury, C Yao, Q Zhou, ...
Proceedings of the National Academy of Sciences 111 (43), 15344-15349, 2014
6692014
Translating HIV sequences into quantitative fitness landscapes predicts viral vulnerabilities for rational immunogen design
AL Ferguson, JK Mann, S Omarjee, T Ndung’u, BD Walker, ...
Immunity 38 (3), 606-617, 2013
2602013
Molecular enhanced sampling with autoencoders: On‐the‐fly collective variable discovery and accelerated free energy landscape exploration
W Chen, AL Ferguson
Journal of computational chemistry 39 (25), 2079-2102, 2018
2282018
Helical antimicrobial polypeptides with radial amphiphilicity
M Xiong, MW Lee, RA Mansbach, Z Song, Y Bao, RM Peek Jr, C Yao, ...
Proceedings of the National Academy of Sciences 112 (43), 13155-13160, 2015
2112015
Machine learning and data science in soft materials engineering
AL Ferguson
Journal of Physics: Condensed Matter 30 (4), 043002, 2017
1992017
Machine learning force fields and coarse-grained variables in molecular dynamics: application to materials and biological systems
P Gkeka, G Stoltz, A Barati Farimani, Z Belkacemi, M Ceriotti, JD Chodera, ...
Journal of chemical theory and computation 16 (8), 4757-4775, 2020
1872020
Mapping membrane activity in undiscovered peptide sequence space using machine learning
EY Lee, BM Fulan, GCL Wong, AL Ferguson
Proceedings of the National Academy of Sciences 113 (48), 13588-13593, 2016
1872016
Nonlinear dimensionality reduction in molecular simulation: The diffusion map approach
AL Ferguson, AZ Panagiotopoulos, IG Kevrekidis, PG Debenedetti
Chemical Physics Letters 509 (1), 1-11, 2011
1802011
Systematic determination of order parameters for chain dynamics using diffusion maps
AL Ferguson, AZ Panagiotopoulos, PG Debenedetti, IG Kevrekidis
Proceedings of the National Academy of Sciences 107 (31), 13597-13602, 2010
1802010
Solubility and Molecular Conformations of n-Alkane Chains in Water
AL Ferguson, PG Debenedetti, AZ Panagiotopoulos
The Journal of Physical Chemistry B 113 (18), 6405-6414, 2009
1782009
The Fitness Landscape of HIV-1 Gag: Advanced Modeling Approaches and Validation of Model Predictions by In Vitro Testing
JK Mann, JP Barton, AL Ferguson, S Omarjee, BD Walker, A Chakraborty, ...
PLoS computational biology 10 (8), e1003776, 2014
1702014
Nonlinear discovery of slow molecular modes using state-free reversible VAMPnets
W Chen, H Sidky, AL Ferguson
The Journal of chemical physics 150 (21), 2019
1452019
Collective variable discovery and enhanced sampling using autoencoders: Innovations in network architecture and error function design
W Chen, AR Tan, AL Ferguson
The Journal of chemical physics 149 (7), 2018
1382018
Machine learning for collective variable discovery and enhanced sampling in biomolecular simulation
H Sidky, W Chen, AL Ferguson
Molecular Physics 118 (5), e1737742, 2020
1372020
What can machine learning do for antimicrobial peptides, and what can antimicrobial peptides do for machine learning?
EY Lee, MW Lee, BM Fulan, AL Ferguson, GCL Wong
Interface focus 7 (6), 20160153, 2017
1372017
Enzyme-like click catalysis by a copper-containing single-chain nanoparticle
J Chen, J Wang, Y Bai, K Li, ES Garcia, AL Ferguson, SC Zimmerman
Journal of the American Chemical Society 140 (42), 13695-13702, 2018
1262018
Synthesis of polypeptides via bioinspired polymerization of in situ purified N-carboxyanhydrides
Z Song, H Fu, J Wang, J Hui, T Xue, LA Pacheco, H Yan, R Baumgartner, ...
Proceedings of the National Academy of Sciences 116 (22), 10658-10663, 2019
1202019
Machine learning for autonomous crystal structure identification
WF Reinhart, AW Long, MP Howard, AL Ferguson, AZ Panagiotopoulos
Soft Matter 13 (27), 4733-4745, 2017
1132017
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