Tommi Vatanen

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Katkıda bulunan yazarlar

Curtis HuttenhowerDepartment of Biostatistics, Harvard School of Public Healthhsph.harvard.edu üzerinde doğrulanmış e-posta adresine sahip
Aleksandar David KosticAssistant Professor, Harvard Medical School & Joslin Diabetes Centerjoslin.harvard.edu üzerinde doğrulanmış e-posta adresine sahip
Vallo TillmannUniversity of Tartuut.ee üzerinde doğrulanmış e-posta adresine sahip
Eric Alan FranzosaSenior Research Scientist / Harvard T. H. Chan School of Public Healthhsph.harvard.edu üzerinde doğrulanmış e-posta adresine sahip
Moran YassourThe Hebrew University of Jerusalemmail.huji.ac.il üzerinde doğrulanmış e-posta adresine sahip
Tapani RaikoPrincipal research scientist, Appleapple.com üzerinde doğrulanmış e-posta adresine sahip
Matej OrešičProfessor of Medicine (Systems Medicine), Örebro University & University of Turkuoru.se üzerinde doğrulanmış e-posta adresine sahip
Clary ClishSenior Director, Metabolomics, Broad Institute of MIT and Harvardbroadinstitute.org üzerinde doğrulanmış e-posta adresine sahip
kugathasan, sProfessor of Pediatrics and Human Genetics, Marcus Professor of Pediatric Gastroenterologyemory.edu üzerinde doğrulanmış e-posta adresine sahip
Outi VaaralaRIA IMED AstraZenecaastrazeneca.com üzerinde doğrulanmış e-posta adresine sahip
Ismo MattilaResearch Scientist, Steno Diabetes Centersteno.dk üzerinde doğrulanmış e-posta adresine sahip
Paul C BlaineyBroad Institute and MIT, Department of Biological Engineeringbroadinstitute.org üzerinde doğrulanmış e-posta adresine sahip
Yann LeCunChief AI Scientist at Facebook & Silver Professor at the Courant Institute, New York Universitycs.nyu.edu üzerinde doğrulanmış e-posta adresine sahip
Harri ValpolaSystem 2 AIsystem2ai.com üzerinde doğrulanmış e-posta adresine sahip
Timo HonkelaUniversity of Helsinkihelsinki.fi üzerinde doğrulanmış e-posta adresine sahip
Eric MalmiStaff Research Scientist, Google DeepMindgoogle.com üzerinde doğrulanmış e-posta adresine sahip
Mikael KuuselaCarnegie Mellon Universityandrew.cmu.edu üzerinde doğrulanmış e-posta adresine sahip
Alexandra (Sasha) ZhernakovaProfessor of Human Genome and Exposome, University Medical Centre Groningen, The Netherlandsumcg.nl üzerinde doğrulanmış e-posta adresine sahip
Cisca Wijmenga, PhDERC advanced investigator; Professor of Human Genetics, Dept Genetics (MGE), UMCG, Groningen, theumcg.nl üzerinde doğrulanmış e-posta adresine sahip
Marc Jan BonderPostdoctoral researcher UMCGumcg.nl üzerinde doğrulanmış e-posta adresine sahip

Takip et

Tommi Vatanen

Associate Professor, University of Helsinki

helsinki.fi üzerinde doğrulanmış e-posta adresine sahip - Ana Sayfa

Human microbiome Bioinformatics Machine learning Computational systems biology Bayesian statistics


Başlık Alıntılara göre sırala Yıla göre sırala Başlığa göre sırala	Alıntı yapanlar Alıntı yapanlar	Yıl
Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity A Zhernakova, A Kurilshikov, MJ Bonder, EF Tigchelaar, M Schirmer, ... Science 352 (6285), 565-569, 2016	1923	2016
Temporal development of the gut microbiome in early childhood from the TEDDY study CJ Stewart, NJ Ajami, JL O’Brien, DS Hutchinson, DP Smith, MC Wong, ... Nature 562 (7728), 583-588, 2018	1817	2018
Gut microbiome structure and metabolic activity in inflammatory bowel disease EA Franzosa, A Sirota-Madi, J Avila-Pacheco, N Fornelos, HJ Haiser, ... Nature microbiology 4 (2), 293-305, 2019	1592	2019
Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans T Vatanen, AD Kostic, E d’Hennezel, H Siljander, EA Franzosa, ... Cell 165 (4), 842-853, 2016	1403	2016
The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes AD Kostic, D Gevers, H Siljander, T Vatanen, T Hyötyläinen, ... Cell host & microbe 17 (2), 260-273, 2015	1287	2015
Pushing stochastic gradient towards second-order methods–backpropagation learning with transformations in nonlinearities T Vatanen, T Raiko, H Valpola, Y LeCun International Conference on Neural Information Processing, 442-449, 2013	1264	2013
Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability M Yassour, T Vatanen, H Siljander, AM Hämäläinen, T Härkönen, ... Science translational medicine 8 (343), 343ra81-343ra81, 2016	1032	2016
The human gut microbiome in early-onset type 1 diabetes from the TEDDY study T Vatanen, EA Franzosa, R Schwager, S Tripathi, TD Arthur, K Vehik, ... Nature 562 (7728), 589-594, 2018	833	2018
The effect of host genetics on the gut microbiome MJ Bonder, A Kurilshikov, EF Tigchelaar, Z Mujagic, F Imhann, AV Vila, ... Nature genetics 48 (11), 1407-1412, 2016	832	2016
Structure-based protein function prediction using graph convolutional networks V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ... Nature communications 12 (1), 3168, 2021	768	2021
A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients AB Hall, M Yassour, J Sauk, A Garner, X Jiang, T Arthur, GK Lagoudas, ... Genome medicine 9, 1-12, 2017	692	2017
The super-donor phenomenon in fecal microbiota transplantation BC Wilson, T Vatanen, WS Cutfield, JM O'Sullivan Frontiers in cellular and infection microbiology 9, 2, 2019	376	2019
The influence of a short-term gluten-free diet on the human gut microbiome MJ Bonder, EF Tigchelaar, X Cai, G Trynka, MC Cenit, B Hrdlickova, ... Genome medicine 8, 1-11, 2016	317	2016
Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children G Zhao, T Vatanen, L Droit, A Park, AD Kostic, TW Poon, H Vlamakis, ... Proceedings of the National Academy of Sciences 114 (30), E6166-E6175, 2017	306	2017
Dysbiosis, inflammation, and response to treatment: a longitudinal study of pediatric subjects with newly diagnosed inflammatory bowel disease KA Shaw, M Bertha, T Hofmekler, P Chopra, T Vatanen, A Srivatsa, ... Genome medicine 8, 1-13, 2016	301	2016
Increased intestinal microbial diversity following fecal microbiota transplant for active Crohn's disease BP Vaughn, T Vatanen, JR Allegretti, A Bai, RJ Xavier, J Korzenik, ... Inflammatory bowel diseases 22 (9), 2182-2190, 2016	250	2016
Elevated rates of horizontal gene transfer in the industrialized human microbiome M Groussin, M Poyet, A Sistiaga, SM Kearney, K Moniz, M Noel, J Hooker, ... Cell 184 (8), 2053-2067. e18, 2021	246	2021
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life T Vatanen, DR Plichta, J Somani, PC Münch, TD Arthur, AB Hall, S Rudolf, ... Nature microbiology 4 (3), 470-479, 2019	226	2019
Experimental design and quantitative analysis of microbial community multiomics H Mallick, S Ma, EA Franzosa, T Vatanen, XC Morgan, C Huttenhower Genome biology 18, 1-16, 2017	186	2017
Self-organization and missing values in SOM and GTM T Vatanen, M Osmala, T Raiko, K Lagus, M Sysi-Aho, M Orešič, T Honkela, ... Neurocomputing 147, 60-70, 2015	137	2015

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