| Mammalian Sir2 homolog SIRT3 regulates global mitochondrial lysine acetylation DB Lombard, FW Alt, HL Cheng, J Bunkenborg, RS Streeper, ... Molecular and cellular biology 27 (24), 8807-8814, 2007 | 1417 | 2007 |
| Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria VK Mootha, J Bunkenborg, JV Olsen, M Hjerrild, JR Wisniewski, E Stahl, ... Cell 115 (5), 629-640, 2003 | 1102 | 2003 |
| Reversible lysine acetylation controls the activity of the mitochondrial enzyme acetyl-CoA synthetase 2 B Schwer, J Bunkenborg, RO Verdin, JS Andersen, E Verdin Proceedings of the National Academy of Sciences 103 (27), 10224-10229, 2006 | 814 | 2006 |
| Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics VK Mootha, P Lepage, K Miller, J Bunkenborg, M Reich, M Hjerrild, ... Proceedings of the National Academy of Sciences 100 (2), 605-610, 2003 | 688 | 2003 |
| A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation P Hägglund, J Bunkenborg, F Elortza, ON Jensen, P Roepstorff Journal of proteome research 3 (3), 556-566, 2004 | 545 | 2004 |
| SIRT3 deacetylates mitochondrial 3-hydroxy-3-methylglutaryl CoA synthase 2 and regulates ketone body production T Shimazu, MD Hirschey, L Hua, KE Dittenhafer-Reed, B Schwer, ... Cell metabolism 12 (6), 654-661, 2010 | 538 | 2010 |
| A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes I Kratchmarova, DE Kalume, B Blagoev, PE Scherer, AV Podtelejnikov, ... Molecular & Cellular Proteomics 1 (3), 213-222, 2002 | 354 | 2002 |
| Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response MV Bennetzen, DH Larsen, J Bunkenborg, J Bartek, J Lukas, ... Molecular & Cellular Proteomics 9 (6), 1314-1323, 2010 | 300 | 2010 |
| MSQuant, an open source platform for mass spectrometry-based quantitative proteomics P Mortensen, JW Gouw, JV Olsen, SE Ong, KTG Rigbolt, J Bunkenborg, ... Journal of proteome research 9 (1), 393-403, 2010 | 291 | 2010 |
| Comprehensive proteomic analysis of human pancreatic juice M Grønborg, J Bunkenborg, TZ Kristiansen, ON Jensen, CJ Yeo, ... Journal of proteome research 3 (5), 1042-1055, 2004 | 264 | 2004 |
| The human cap-binding complex is functionally connected to the nuclear RNA exosome PR Andersen, M Domanski, MS Kristiansen, H Storvall, E Ntini, ... Nature structural & molecular biology 20 (12), 1367-1376, 2013 | 242 | 2013 |
| Screening for N‐glycosylated proteins by liquid chromatography mass spectrometry J Bunkenborg, BJ Pilch, AV Podtelejnikov, JR Wiśniewski Proteomics 4 (2), 454-465, 2004 | 227 | 2004 |
| S100A11 is required for efficient plasma membrane repair and survival of invasive cancer cells JK Jaiswal, SP Lauritzen, L Scheffer, M Sakaguchi, J Bunkenborg, ... Nature communications 5 (1), 3795, 2014 | 221 | 2014 |
| A proteomic analysis of human bile TZ Kristiansen, J Bunkenborg, M Gronborg, H Molina, PJ Thuluvath, ... Molecular & Cellular Proteomics 3 (7), 715-728, 2004 | 212 | 2004 |
| Regulated assembly of a supramolecular centrosome scaffold in vitro JB Woodruff, O Wueseke, V Viscardi, J Mahamid, SD Ochoa, ... Science 348 (6236), 808-812, 2015 | 206 | 2015 |
| Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens J Dengjel, M Høyer-Hansen, MO Nielsen, T Eisenberg, LM Harder, ... Molecular & Cellular Proteomics 11 (3), M111. 014035, 2012 | 157 | 2012 |
| VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins R Matthiesen, MB Trelle, P Højrup, J Bunkenborg, ON Jensen Journal of proteome research 4 (6), 2338-2347, 2005 | 155 | 2005 |
| Quantitative proteomic assessment of very early cellular signaling events J Dengjel, V Akimov, JV Olsen, J Bunkenborg, M Mann, B Blagoev, ... Nature biotechnology 25 (5), 566-568, 2007 | 147 | 2007 |
| Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase … F Elortza, S Mohammed, J Bunkenborg, LJ Foster, TS Nühse, U Brodbeck, ... Journal of Proteome Research 5 (4), 935-943, 2006 | 137 | 2006 |
| An enzymatic deglycosylation scheme enabling identification of core fucosylated N-glycans and O-glycosylation site mapping of human plasma proteins P Hägglund, R Matthiesen, F Elortza, P Højrup, P Roepstorff, ON Jensen, ... Journal of proteome research 6 (8), 3021-3031, 2007 | 130 | 2007 |