| DOCK 6: Combining techniques to model RNA–small molecule complexes PT Lang, SR Brozell, S Mukherjee, EF Pettersen, EC Meng, V Thomas, ... Rna 15 (6), 1219-1230, 2009 | 855 | 2009 |
| DOCK 6: Impact of new features and current docking performance WJ Allen, TE Balius, S Mukherjee, SR Brozell, DT Moustakas, PT Lang, ... Journal of computational chemistry 36 (15), 1132-1156, 2015 | 792 | 2015 |
| Docking validation resources: protein family and ligand flexibility experiments S Mukherjee, TE Balius, RC Rizzo Journal of chemical information and modeling 50 (11), 1986-2000, 2010 | 227 | 2010 |
| Evaluation of DOCK 6 as a pose generation and database enrichment tool SR Brozell, S Mukherjee, TE Balius, DR Roe, DA Case, RC Rizzo Journal of computer-aided molecular design 26, 749-773, 2012 | 190 | 2012 |
| Bridging microscopic and macroscopic mechanisms of p53-MDM2 binding with kinetic network models G Zhou, GA Pantelopulos, S Mukherjee, VA Voelz Biophysical journal 113 (4), 785-793, 2017 | 95 | 2017 |
| Implementation and evaluation of a docking‐rescoring method using molecular footprint comparisons TE Balius, S Mukherjee, RC Rizzo Journal of computational chemistry 32 (10), 2273-2289, 2011 | 91 | 2011 |
| Insights into peptoid helix folding cooperativity from an improved backbone potential S Mukherjee, G Zhou, C Michel, VA Voelz The Journal of Physical Chemistry B 119 (50), 15407-15417, 2015 | 49 | 2015 |
| Grid‐based molecular footprint comparison method for docking and de novo design: Application to HIVgp41 TE Balius, WJ Allen, S Mukherjee, RC Rizzo Journal of computational chemistry 34 (14), 1226-1240, 2013 | 41 | 2013 |
| Origins of resistance to the HIVgp41 viral entry inhibitor T20 BE McGillick, TE Balius, S Mukherjee, RC Rizzo Biochemistry 49 (17), 3575-3592, 2010 | 41 | 2010 |
| Microsecond simulations of mdm2 and its complex with p53 yield insight into force field accuracy and conformational dynamics GA Pantelopulos, S Mukherjee, VA Voelz Proteins: Structure, Function, and Bioinformatics 83 (9), 1665-1676, 2015 | 32 | 2015 |
| Precisely tuneable energy transfer system using peptoid helix-based molecular scaffold B Kang, W Yang, S Lee, S Mukherjee, J Forstater, H Kim, B Goh, TY Kim, ... Scientific reports 7 (1), 4786, 2017 | 30 | 2017 |
| Markov models of the apo-MDM2 lid region reveal diffuse yet two-state binding dynamics and receptor poses for computational docking S Mukherjee, GA Pantelopulos, VA Voelz Scientific reports 6 (1), 31631, 2016 | 25 | 2016 |
| Dock 6.7 users manual PT Lang, D Moustakas, S Brozell, N Carrascal, S Mukherjee, S Pegg, ... The Official UCSF DOCK Web-Site. Fev, 2015 | 19 | 2015 |
| DOCK 6.1, University of California, San Francisco PT Lang, D Moustakas, S Brozell, N Carrascal, S Mukherjee, S Pegg, ... | 9 | 2007 |
| DOCK 6.9 users manual WJ Allen, T Balius, S Brozell, B Fochtman, L Jiang, TD McGee Jr, I Kuntz University of California, California 27, 2018 | 5 | 2018 |
| Docking platform and validation resources for structure-based drug design S Mukherjee State University of New York at Stony Brook, 2012 | 2 | 2012 |
| Algorithmic improvements and development for DOCK6. 4 S Mukherjee, TE Balius, RC Rizzo ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 241, 2011 | 1 | 2011 |
| Improved backbone parameters for peptoid modeling S Mukherjee, VA Voelz ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 248, 2014 | | 2014 |
| Implementation and evaluation of a multi-grid scoring function for structure-based design WJ Allen, TE Balius, S Mukherjee, RC Rizzo ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 247, 2014 | | 2014 |
| Development of a multiple receptor docking protocol to account for sequence and conformational variability in DOCK BC Fochtman, TE Balius, S Mukherjee, PM Holden, RC Rizzo ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 244, 2012 | | 2012 |
Trent E. BaliusFrederick National Laboratory for Cancer Researchnih.gov üzerinde doğrulanmış e-posta adresine sahip