| Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero, J Carrera, JC Mason, ... Science 369 (6502), eaav3751, 2020 | 151 | 2020 |
| In a randomized trial in prostate cancer patients, dietary protein restriction modifies markers of leptin and insulin signaling in plasma extracellular vesicles E Eitan, V Tosti, CN Suire, E Cava, S Berkowitz, B Bertozzi, SM Raefsky, ... Aging cell 16 (6), 1430-1433, 2017 | 56 | 2017 |
| A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery A Creason, D Haan, K Dang, KE Chiotti, M Inkman, A Lamb, T Yu, Y Hu, ... Cell systems 12 (8), 827-838. e5, 2021 | 30 | 2021 |
| Vivarium: an interface and engine for integrative multiscale modeling in computational biology E Agmon, RK Spangler, CJ Skalnik, W Poole, SM Peirce, JH Morrison, ... Bioinformatics 38 (7), 1972-1979, 2022 | 29 | 2022 |
| BioSimulators: a central registry of simulation engines and services for recommending specific tools B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ... Nucleic acids research 50 (W1), W108-W114, 2022 | 26 | 2022 |
| A Multi-Scale Approach to Modeling E. coli Chemotaxis E Agmon, RK Spangler Entropy 22 (10), 1101, 2020 | 12 | 2020 |
| Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses CJ Skalnik, SY Cheah, MY Yang, MB Wolff, RK Spangler, L Talman, ... PLOS Computational Biology 19 (6), e1011232, 2023 | 9 | 2023 |
| Whole-colony modeling of Escherichia coli CJ Skalnik, E Agmon, RK Spangler, L Talman, JH Morrison, SM Peirce, ... BioRxiv, 2021.04. 27.441666, 2021 | 7 | 2021 |
| Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation. Science 369: eaav3751 DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero, J Carrera, JC Mason, ... | 7 | 2020 |
| Dielectric properties of disordered A6B2O17 (A = Zr; B = Nb, Ta) phases RJ Spurling, SSI Almishal, J Casamento, J Hayden, R Spangler, ... Journal of the American Ceramic Society 107 (10), 6868-6875, 2024 | 4 | 2024 |
| Exploring integrative analysis using the BioMedical evidence graph A Struck, B Walsh, A Buchanan, JA Lee, R Spangler, JM Stuart, K Ellrott JCO Clinical Cancer Informatics 4, 147-159, 2020 | 4 | 2020 |
| Tepoxalin targeting of abcb1 overexpressing cancers S Corsello, R Spangler, R Nagari, T Golub US Patent App. 17/291,458, 2022 | | 2022 |
| Vanadium compositions and methods for treatment of cancer S Corsello, R Spangler, R Nagari, T Golub US Patent App. 17/293,375, 2022 | | 2022 |
| Use of disulfiram and other compounds to treat cancers with loss of chromosome 16q and/or low expression of metallothionein proteins S Corsello, R Spangler, R Nagari, T Golub US Patent App. 17/293,381, 2022 | | 2022 |
| Supplementary Materials for Vivarium: an interface and engine for integrative multiscale modeling in computational biology E Agmon, RK Spangler, CJ Skalnik, W Poole, SM Peirce, JH Morrison, ... | | 2021 |
| Aryl hydrocarbon receptor (ahr) activator compounds as cancer therapeutics S Corsello, R Spangler, R Nagari, T Golub, A Madec | | 2021 |
| Supplementary Materials for A Multi-Scale Approach to Modeling E. coli Chemotaxis E Agmon, RK Spangler | | 2020 |
| Discovering Peru: Church, Language, and Society in Context TM Kelly, R Spangler, K Woolley Creighton University, 2014 | | 2014 |
| Using Reinforcement Learning to Optimize the Rules of a Board Game G Sun, R Spangler | | |
