| Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-218, 2007 | 2301 | 2007 |
| Evolutionary and biomedical insights from the rhesus macaque genome RA Gibbs, J Rogers, MG Katze, R Bumgarner, GM Weinstock, ER Mardis, ... Science 316 (5822), 222-234, 2007 | 1563 | 2007 |
| CAFE: a computational tool for the study of gene family evolution T De Bie, N Cristianini, JP Demuth, MW Hahn Bioinformatics 22 (10), 1269-1271, 2006 | 1448 | 2006 |
| The evolution of transcriptional regulation in eukaryotes GA Wray, MW Hahn, E Abouheif, JP Balhoff, M Pizer, MV Rockman, ... Molecular biology and evolution 20 (9), 1377-1419, 2003 | 1436 | 2003 |
| Sex Determination: Why So Many Ways of Doing It? D Bachtrog, JE Mank, CL Peichel, M Kirkpatrick, SP Otto, TL Ashman, ... PLOS Biology 12 (7), e1001899, 2014 | 1247 | 2014 |
| Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow TE Cruickshank, MW Hahn Molecular ecology 23 (13), 3133-3157, 2014 | 1121 | 2014 |
| Genomic islands of speciation in Anopheles gambiae TL Turner, MW Hahn, SV Nuzhdin PLoS Biology 3 (9), e285, 2005 | 854 | 2005 |
| Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3 MV Han, GWC Thomas, J Lugo-Martinez, MW Hahn Molecular biology and evolution 30 (8), 1987-1997, 2013 | 763 | 2013 |
| Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks MW Hahn, AD Kern Molecular biology and evolution 22 (4), 803-806, 2005 | 746 | 2005 |
| Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans DJ Begun, AK Holloway, K Stevens, LDW Hillier, YP Poh, MW Hahn, ... PLoS Biology 5 (11), e310, 2007 | 745 | 2007 |
| Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ... Nature 450 (7167), 219-232, 2007 | 721 | 2007 |
| Comparative and demographic analysis of orang-utan genomes DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ... Nature 469 (7331), 529-533, 2011 | 708 | 2011 |
| Extensive introgression in a malaria vector species complex revealed by phylogenomics MC Fontaine, JB Pease, A Steele, RM Waterhouse, DE Neafsey, ... Science 347 (6217), 1258524, 2015 | 644 | 2015 |
| Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes DE Neafsey, RM Waterhouse, MR Abai, SS Aganezov, MA Alekseyev, ... Science 347 (6217), 1258522, 2015 | 627 | 2015 |
| How reticulated are species? J Mallet, N Besansky, MW Hahn BioEssays 38 (2), 140-149, 2016 | 577 | 2016 |
| Random drift and culture change RA Bentley, MW Hahn, SJ Shennan Proceedings of the Royal Society of London B: Biological Sciences 271 (1547 …, 2004 | 576 | 2004 |
| New methods to calculate concordance factors for phylogenomic datasets BQ Minh, MW Hahn, R Lanfear Molecular biology and evolution 37 (9), 2727-2733, 2020 | 521 | 2020 |
| Convergent evolution of the genomes of marine mammals AD Foote, Y Liu, GWC Thomas, T Vinař, J Alföldi, J Deng, S Dugan, ... Nature genetics 47 (3), 272-275, 2015 | 471 | 2015 |
| CAFE 5 models variation in evolutionary rates among gene families FK Mendes, D Vanderpool, B Fulton, MW Hahn Bioinformatics 36 (22-23), 5516-5518, 2020 | 460 | 2020 |
| Phylogenomics reveals three sources of adaptive variation during a rapid radiation JB Pease, DC Haak, MW Hahn, LC Moyle PLoS biology 14 (2), e1002379, 2016 | 438 | 2016 |
