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Alexander Johansen
Alexander Johansen
Stanford University
stanford.edu üzerinde doğrulanmış e-posta adresine sahip
Başlık
Alıntı yapanlar
Alıntı yapanlar
Yıl
SignalP 6.0 predicts all five types of signal peptides using protein language models
F Teufel, JJ Almagro Armenteros, AR Johansen, MH Gíslason, SI Pihl, ...
Nature biotechnology 40 (7), 1023-1025, 2022
17352022
DeepLoc 2.0: multi-label subcellular localization prediction using protein language models
V Thumuluri, JJ Almagro Armenteros, AR Johansen, H Nielsen, O Winther
Nucleic acids research 50 (W1), W228-W234, 2022
3962022
An introduction to deep learning on biological sequence data: examples and solutions
VI Jurtz, AR Johansen, M Nielsen, JJ Almagro Armenteros, H Nielsen, ...
Bioinformatics 33 (22), 3685-3690, 2017
1842017
Deep neural network-based decision network
AR Johansen, B McCann, J Bradbury, R Socher
US Patent 11,250,311, 2022
1662022
Epileptiform spike detection via convolutional neural networks
AR Johansen, J Jin, T Maszczyk, J Dauwels, SS Cash, MB Westover
International Conference on Acoustics, Speech and Signal Processing (IEEE …, 2016
1292016
Prediction of GPI-anchored proteins with pointer neural networks
MH Gíslason, H Nielsen, JJA Armenteros, AR Johansen
Current Research in Biotechnology 3, 6-13, 2021
1092021
Probability-based guider
AR Johansen, B McCann, J Bradbury, R Socher
US Patent 11,354,565, 2022
1042022
A deep learning approach to adherence detection for type 2 diabetics
A Mohebbi, TB Aradóttir, AR Johansen, H Bengtsson, M Fraccaro, ...
Engineering in Medicine and Biology Society (IEEE-EMBC), 2896-2899, 2017
852017
Neural Arithmetic Units
A Madsen, AR Johansen
International Conference on Learning Representations (ICLR), 2020
592020
NetSolP: predicting protein solubility in Escherichia coli using language models
V Thumuluri, HM Martiny, JJ Almagro Armenteros, J Salomon, H Nielsen, ...
Bioinformatics 38 (4), 941-946, 2022
502022
Short Term Blood Glucose Prediction based on Continuous Glucose Monitoring Data
A Mohebbi, AR Johansen, N Hansen, PE Christensen, JM Tarp, ...
Engineering in Medicine and Biology Society (IEEE-EMBC), 2020
312020
Deep recurrent conditional random field network for protein secondary prediction
AR Johansen, CK Sønderby, SK Sønderby, O Winther
Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB), 73-78, 2017
262017
Language modelling for biological sequences–curated datasets and baselines
JJ Almagro Armenteros, AR Johansen, O Winther, H Nielsen
BioRxiv, 2020.03. 09.983585, 2020
252020
GraphPart: homology partitioning for biological sequence analysis
F Teufel, MH Gíslason, JJ Almagro Armenteros, AR Johansen, O Winther, ...
NAR genomics and bioinformatics 5 (4), lqad088, 2023
192023
DeepLoc 2.1: multi-label membrane protein type prediction using protein language models
MT Ødum, F Teufel, V Thumuluri, JJ Almagro Armenteros, AR Johansen, ...
Nucleic Acids Research 52 (W1), W215-W220, 2024
162024
Learning when to skim and when to read
AR Johansen, R Socher
Workshop on Representation Learning for NLP (ACL), 2017
152017
Clinidigest: a case study in large language model based large-scale summarization of clinical trial descriptions
R White, T Peng, P Sripitak, A Rosenberg Johansen, M Snyder
Proceedings of the 2023 ACM Conference on Information Technology for Social …, 2023
132023
Deep protein representations enable recombinant protein expression prediction
HM Martiny, JJA Armenteros, AR Johansen, J Salomon, H Nielsen
Computational Biology and Chemistry 95, 107596, 2021
122021
Measuring Arithmetic Extrapolation Performance
A Madsen, AR Johansen
Conference on Neural Information Processing Systems (SEDL | NeurIPS), 2019
92019
Neural Machine Translation with Characters and Hierarchical Encoding
AR Johansen, JM Hansen, EK Obeid, CK Sønderby, O Winther
Symposium on Recurrent Neural Networks (NIPS), 2016
82016
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