| Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters LJ Core, JJ Waterfall, JT Lis Science 322 (5909), 1845-1848, 2008 | 2348 | 2008 |
| Universally sloppy parameter sensitivities in systems biology models RN Gutenkunst, JJ Waterfall, FP Casey, KS Brown, CR Myers, JP Sethna PLoS computational biology 3 (10), e189, 2007 | 1460 | 2007 |
| A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells N Hah, CG Danko, L Core, JJ Waterfall, A Siepel, JT Lis, WL Kraus Cell 145 (4), 622-634, 2011 | 562 | 2011 |
| Common molecular subtypes among Asian hepatocellular carcinoma and cholangiocarcinoma J Chaisaingmongkol, A Budhu, H Dang, S Rabibhadana, B Pupacdi, ... Cancer cell 32 (1), 57-70. e3, 2017 | 381 | 2017 |
| Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor JK Killian, SY Kim, M Miettinen, C Smith, M Merino, M Tsokos, M Quezado, ... Cancer discovery 3 (6), 648-657, 2013 | 366 | 2013 |
| Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells IM Min, JJ Waterfall, LJ Core, RJ Munroe, J Schimenti, JT Lis Genes & development 25 (7), 742-754, 2011 | 350 | 2011 |
| High prevalence of MAP2K1 mutations in variant and IGHV4-34–expressing hairy-cell leukemias JJ Waterfall, E Arons, RL Walker, M Pineda, L Roth, JK Killian, OD Abaan, ... Nature genetics 46 (1), 8-10, 2014 | 307 | 2014 |
| Defining the status of RNA polymerase at promoters LJ Core, JJ Waterfall, DA Gilchrist, DC Fargo, H Kwak, K Adelman, JT Lis Cell reports 2 (4), 1025-1035, 2012 | 285 | 2012 |
| Point mutations in exon 1B of APC reveal gastric adenocarcinoma and proximal polyposis of the stomach as a familial adenomatous polyposis variant J Li, SL Woods, S Healey, J Beesley, X Chen, JS Lee, H Sivakumaran, ... The American Journal of Human Genetics 98 (5), 830-842, 2016 | 246 | 2016 |
| The epigenetic control of stemness in CD8+ T cell fate commitment L Pace, C Goudot, E Zueva, P Gueguen, N Burgdorf, JJ Waterfall, ... Science 359 (6372), 177-186, 2018 | 230 | 2018 |
| Recurrent epimutation of SDHC in gastrointestinal stromal tumors JK Killian, M Miettinen, RL Walker, Y Wang, YJ Zhu, JJ Waterfall, N Noyes, ... Science translational medicine 6 (268), 268ra177-268ra177, 2014 | 199 | 2014 |
| Sloppy-model universality class and the Vandermonde matrix JJ Waterfall, FP Casey, RN Gutenkunst, KS Brown, CR Myers, ... Physical review letters 97 (15), 150601, 2006 | 189 | 2006 |
| Clonally expanded T cells reveal immunogenicity of rhabdoid tumors A Leruste, J Tosello, RN Ramos, A Tauziède-Espariat, S Brohard, ZY Han, ... Cancer cell 36 (6), 597-612. e8, 2019 | 143 | 2019 |
| Harnessing synthetic lethality to predict the response to cancer treatment JS Lee, A Das, L Jerby-Arnon, R Arafeh, N Auslander, M Davidson, ... Nature communications 9 (1), 2546, 2018 | 136 | 2018 |
| Contribution of resident and circulating precursors to tumor-infiltrating CD8+ T cell populations in lung cancer P Gueguen, C Metoikidou, T Dupic, M Lawand, C Goudot, S Baulande, ... Science Immunology 6 (55), eabd5778, 2021 | 132 | 2021 |
| Transcriptional activation by the thyroid hormone receptor through ligand-dependent receptor recruitment and chromatin remodelling L Grøntved, JJ Waterfall, DW Kim, S Baek, MH Sung, L Zhao, JW Park, ... Nature communications 6 (1), 7048, 2015 | 129 | 2015 |
| Optimal experimental design in an epidermal growth factor receptor signalling and down-regulation model FP Casey, D Baird, Q Feng, RN Gutenkunst, JJ Waterfall, CR Myers, ... IET systems biology 1 (3), 190-202, 2007 | 101 | 2007 |
| Extracting falsifiable predictions from sloppy models RN Gutenkunst, FP Casey, JJ Waterfall, CR Myers, JP Sethna Annals of the New York Academy of Sciences 1115 (1), 203-211, 2007 | 78 | 2007 |
| Splicing Patterns in SF3B1-Mutated Uveal Melanoma Generate Shared Immunogenic Tumor-Specific Neoepitopes J Bigot, AI Lalanne, F Lucibello, P Gueguen, A Houy, S Dayot, O Ganier, ... Cancer discovery 11 (8), 1938-1951, 2021 | 67 | 2021 |
| Noncanonical splicing junctions between exons and transposable elements represent a source of immunogenic recurrent neo-antigens in patients with lung cancer A Merlotti, B Sadacca, YA Arribas, M Ngoma, M Burbage, C Goudot, ... Science immunology 8 (80), eabm6359, 2023 | 61 | 2023 |
