| Coarse-grained protein models and their applications S Kmiecik, D Gront, M Kolinski, L Wieteska, AE Dawid, A Kolinski Chemical reviews 116 (14), 7898-7936, 2016 | 1148 | 2016 |
| Flexible docking of peptides to proteins using CABS‐dock M Kurcinski, A Badaczewska‐Dawid, M Kolinski, A Kolinski, S Kmiecik Protein Science 29 (1), 211-222, 2020 | 74 | 2020 |
| CABS-dock standalone: a toolbox for flexible protein–peptide docking M Kurcinski, M Pawel Ciemny, T Oleniecki, A Kuriata, ... Bioinformatics 35 (20), 4170-4172, 2019 | 72 | 2019 |
| Computational reconstruction of atomistic protein structures from coarse-grained models AE Badaczewska-Dawid, A Kolinski, S Kmiecik Computational and structural biotechnology journal 18, 162-176, 2020 | 65 | 2020 |
| Modeling of protein structural flexibility and large-scale dynamics: Coarse-grained simulations and elastic network models S Kmiecik, M Kouza, AE Badaczewska-Dawid, A Kloczkowski, A Kolinski International journal of molecular sciences 19 (11), 3496, 2018 | 64 | 2018 |
| Modeling of disordered protein structures using monte carlo simulations and knowledge-based statistical force fields MP Ciemny, AE Badaczewska-Dawid, M Pikuzinska, A Kolinski, ... International journal of molecular sciences 20 (3), 606, 2019 | 47 | 2019 |
| SURPASS low-resolution coarse-grained protein modeling AE Dawid, D Gront, A Kolinski Journal of chemical theory and computation 13 (11), 5766-5779, 2017 | 28 | 2017 |
| MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes AE Badaczewska-Dawid, C Nithin, K Wroblewski, M Kurcinski, S Kmiecik Nucleic Acids Research 50 (W1), W474-W482, 2022 | 27 | 2022 |
| HaDeX: an R package and web-server for analysis of data from hydrogen–deuterium exchange mass spectrometry experiments W Puchała, M Burdukiewicz, M Kistowski, KA Dąbrowska, ... Bioinformatics 36 (16), 4516-4518, 2020 | 18 | 2020 |
| Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement A Badaczewska-Dawid, S Kmiecik, M Kolinski Briefings in Bioinformatics, 1-9, 2020 | 13 | 2020 |
| Protocols for fast simulations of protein structure flexibility using CABS-flex and SURPASS A Badaczewska-Dawid, A Kolinski, S Kmiecik Protein Structure Prediction. Methods in Molecular Biology 2165, 337-353, 2020 | 12 | 2020 |
| A3D database: structure-based predictions of protein aggregation for the human proteome AE Badaczewska-Dawid, J Garcia-Pardo, A Kuriata, J Pujols, S Ventura, ... Bioinformatics 38 (11), 3121-3123, 2022 | 11 | 2022 |
| BioShell 3.0: library for processing structural biology data JM Macnar, NA Szulc, JD Kryś, AE Badaczewska-Dawid, D Gront Biomolecules 10 (3), 461, 2020 | 11 | 2020 |
| Coarse-grained modeling of the interplay between secondary structure propensities and protein fold assembly AE Dawid, D Gront, A Kolinski Journal of Chemical Theory and Computation 14 (4), 2277-2287, 2018 | 10 | 2018 |
| BIAPSS: a comprehensive physicochemical Analyzer of proteins undergoing liquid–liquid phase separation AE Badaczewska-Dawid, VN Uversky, DA Potoyan International Journal of Molecular Sciences 23 (11), 6204, 2022 | 9 | 2022 |
| A3D model organism database (A3D-MODB): a database for proteome aggregation predictions in model organisms AE Badaczewska-Dawid, A Kuriata, C Pintado-Grima, J Garcia-Pardo, ... Nucleic acids research 52 (D1), D360-D367, 2024 | 8 | 2024 |
| Protocols for all-atom reconstruction and high-resolution refinement of protein-peptide complex structures A Badaczewska-Dawid, A Khramushin, A Kolinski, O Schueler-Furman, ... Protein Structure Prediction. Methods in Molecular Biology 2165, 273-287, 2020 | 8 | 2020 |
| A3DyDB: exploring structural aggregation propensities in the yeast proteome J Garcia-Pardo, AE Badaczewska-Dawid, C Pintado-Grima, V Iglesias, ... Microbial cell factories 22 (1), 186, 2023 | 7 | 2023 |
| Structure prediction of linear and cyclic peptides using CABS-flex A Badaczewska-Dawid, K Wróblewski, M Kurcinski, S Kmiecik Briefings in Bioinformatics 25 (2), bbae003, 2024 | 6 | 2024 |
| Protocols for rational design of protein solubility and aggregation properties using Aggrescan3D standalone A Kuriata, AE Badaczewska-Dawid, J Pujols, S Ventura, S Kmiecik Computer Simulations of Aggregation of Proteins and Peptides, 17-40, 2022 | 4 | 2022 |
Sebastian KmiecikLaboratory of Computational Biology, Biological and Chemical Research Centre, University of Warsawchem.uw.edu.pl üzerinde doğrulanmış e-posta adresine sahip
