| DBPPred-PDSD: Machine learning approach for prediction of DNA-binding proteins using Discrete Wavelet Transform and optimized integrated features space F Ali, M Kabir, M Arif, ZNK Swati, ZU Khan, M Ullah, DJ Yu Chemometrics and Intelligent Laboratory Systems 182, 21-30, 2018 | 69 | 2018 |
| DeepAVP-TPPred: identification of antiviral peptides using transformed image-based localized descriptors and binary tree growth algorithm M Ullah, S Akbar, A Raza, Q Zou Bioinformatics 40 (5), btae305, 2024 | 39 | 2024 |
| PScL-HDeep: image-based prediction of protein subcellular location in human tissue using ensemble learning of handcrafted and deep learned features with two-layer feature selection M Ullah, K Han, F Hadi, J Xu, J Song, DJ Yu Briefings in Bioinformatics 22 (6), bbab278, 2021 | 35 | 2021 |
| A foreground extraction approach using convolutional neural network with graph cut M Ullah, A Iltaf, Q Hou, F Ali, C Liu 2018 IEEE 3rd international conference on image, vision and computing (ICIVC …, 2018 | 20 | 2018 |
| PScL-DDCFPred: an ensemble deep learning-based approach for characterizing multiclass subcellular localization of human proteins from bioimage data M Ullah, F Hadi, J Song, DJ Yu Bioinformatics 38 (16), 4019-4026, 2022 | 12 | 2022 |
| DHCAE: Deep hybrid convolutional autoencoder approach for robust supervised hyperspectral unmixing F Hadi, J Yang, M Ullah, I Ahmad, G Farooque, L Xiao Remote Sensing 14 (18), 4433, 2022 | 10 | 2022 |
| DeepAIPs-Pred: predicting anti-inflammatory peptides using local evolutionary transformation images and structural embedding-based optimal descriptors with Self-Normalized BiTCNs S Akbar, M Ullah, A Raza, Q Zou, W Alghamdi Journal of Chemical Information and Modeling 64 (24), 9609-9625, 2024 | 4 | 2024 |
| PScL-2LSAESM: bioimage-based prediction of protein subcellular localization by integrating heterogeneous features with the two-level SAE-SM and mean ensemble method M Ullah, F Hadi, J Song, DJ Yu Bioinformatics 39 (1), btac727, 2023 | 2 | 2023 |
| TargetCLP: clathrin proteins prediction combining transformed and evolutionary scale modeling-based multi-view features via weighted feature integration approach M Ullah, S Akbar, A Raza, KA Khan, Q Zou Briefings in Bioinformatics 26 (1), bbaf026, 2025 | | 2025 |
| Digging More in Neural World: An Efficient Approach for Hyperspectral Image Classification Using Convolutional Neural Network A Iltaf, M Ullah, J Shen, Z Wu, C Liu, Z Ahmad Geo-Spatial Knowledge and Intelligence: 5th International Conference, GSKI …, 2018 | | 2018 |