Підписатись
Yumeng Yan
Yumeng Yan
University of Copenhagen
Підтверджена електронна адреса в hust.edu.cn
Назва
Посилання
Посилання
Рік
The HDOCK server for integrated protein–protein docking
Y Yan, H Tao, J He, SY Huang
Nature protocols 15 (5), 1829-1852, 2020
11942020
HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy
Y Yan, D Zhang, P Zhou, B Li, SY Huang
Nucleic acids research 45 (W1), W365-W373, 2017
10582017
Molecular mechanism of evolution and human infection with SARS-CoV-2
J He, H Tao, Y Yan, SY Huang, Y Xiao
Viruses 12 (4), 428, 2020
2232020
IL-6 regulates autophagy and chemotherapy resistance by promoting BECN1 phosphorylation
F Hu, D Song, Y Yan, C Huang, C Shen, J Lan, Y Chen, A Liu, Q Wu, ...
Nature Communications 12 (1), 3651, 2021
1592021
Addressing recent docking challenges: A hybrid strategy to integrate template‐based and free protein‐protein docking
Y Yan, Z Wen, X Wang, SY Huang
Proteins: Structure, Function, and Bioinformatics 85 (3), 497-512, 2017
1322017
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1282019
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
1032021
Hierarchical flexible peptide docking by conformer generation and ensemble docking of peptides
P Zhou, B Li, Y Yan, B Jin, L Wang, SY Huang
Journal of Chemical Information and Modeling 58 (6), 1292-1302, 2018
702018
Efficient conformational ensemble generation of protein-bound peptides
Y Yan, DI Zhang, SY Huang
Journal of cheminformatics 9, 1-13, 2017
672017
Accurate prediction of inter-protein residue–residue contacts for homo-oligomeric protein complexes
Y Yan, SY Huang
Briefings in bioinformatics 22 (5), bbab038, 2021
622021
HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetry
Y Yan, H Tao, SY Huang
Nucleic acids research 46 (W1), W423-W431, 2018
472018
Pushing the accuracy limit of shape complementarity for protein-protein docking
Y Yan, SY Huang
BMC bioinformatics 20, 1-10, 2019
402019
Docking and scoring for nucleic acid–ligand interactions: Principles and current status
Y Feng, Y Yan, J He, H Tao, Q Wu, SY Huang
Drug Discovery Today 27 (3), 838-847, 2022
392022
DeepHomo2. 0: improved protein–protein contact prediction of homodimers by transformer-enhanced deep learning
P Lin, Y Yan, SY Huang
Briefings in Bioinformatics 24 (1), bbac499, 2023
242023
Modeling protein–protein or protein–DNA/RNA complexes using the HDOCK webserver
Y Yan, SY Huang
Protein Structure Prediction, 217-229, 2020
232020
Ion selectivity and rotor coupling of the Vibrio flagellar sodium-driven stator unit
H Hu, PF Popp, M Santiveri, A Roa-Eguiara, Y Yan, FJO Martin, Z Liu, ...
Nature communications 14 (1), 4411, 2023
192023
Structure and mechanism of the Zorya anti-phage defense system
H Hu, PF Popp, TCD Hughes, A Roa-Eguiara, NR Rutbeek, FJO Martin, ...
Nature, 1-3, 2024
152024
Deep transfer learning for inter-chain contact predictions of transmembrane protein complexes
P Lin, Y Yan, H Tao, SY Huang
Nature Communications 14 (1), 4935, 2023
132023
Protein-protein docking with improved shape complementarity
Y Yan, SY Huang
Intelligent Computing Theories and Application: 14th International …, 2018
112018
Challenges and opportunities of automated protein‐protein docking: HDOCK server vs human predictions in CAPRI Rounds 38‐46
Y Yan, J He, Y Feng, P Lin, H Tao, SY Huang
Proteins: Structure, Function, and Bioinformatics 88 (8), 1055-1069, 2020
102020
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