Inferring tumour purity and stromal and immune cell admixture from expression data K Yoshihara, M Shahmoradgoli, E Martínez, R Vegesna, H Kim, ... Nature communications 4 (1), 2612, 2013 | 7277 | 2013 |
The somatic genomic landscape of glioblastoma CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ... cell 155 (2), 462-477, 2013 | 5354 | 2013 |
Comprehensive molecular characterization of clear cell renal cell carcinoma Cancer Genome Atlas Research Network Analysis working group: Baylor College ... Nature 499 (7456), 43-49, 2013 | 2998 | 2013 |
The landscape and therapeutic relevance of cancer-associated transcript fusions K Yoshihara, Q Wang, W Torres-Garcia, S Zheng, R Vegesna, H Kim, ... Oncogene 34 (37), 4845-4854, 2015 | 500 | 2015 |
Inferring tumour purity and stromal and immune cell admixture from expression data. Nat Commun. 2013; 4: 2612 K Yoshihara, M Shahmoradgoli, E Martínez, R Vegesna, H Kim, ... | 385 | 2024 |
Halogen interactions in protein–ligand complexes: implications of halogen bonding for rational drug design S Sirimulla, JB Bailey, R Vegesna, M Narayan Journal of chemical information and modeling 53 (11), 2781-2791, 2013 | 280 | 2013 |
PRADA: pipeline for RNA sequencing data analysis W Torres-García, S Zheng, A Sivachenko, R Vegesna, Q Wang, R Yao, ... Bioinformatics 30 (15), 2224-2226, 2014 | 184 | 2014 |
Inferring tumour purity and stromal and immune cell admixture from expression data. Nat Commun 4: 2612 K Yoshihara, M Shahmoradgoli, E Martínez, R Vegesna, H Kim, ... | 177 | 2013 |
A survey of intragenic breakpoints in glioblastoma identifies a distinct subset associated with poor survival S Zheng, J Fu, R Vegesna, Y Mao, LE Heathcock, W Torres-Garcia, ... Genes & development 27 (13), 1462-1472, 2013 | 87 | 2013 |
Inferring tumour purity and stromal and immune cell admixture from expression data, Nat. Commun. 4 (2013) 2612 K Yoshihara, M Shahmoradgoli, E Martínez, R Vegesna, H Kim, ... Epub 2013/10/12, 2013 | 66 | 2013 |
Dynamic evolution of great ape Y chromosomes M Cechova, R Vegesna, M Tomaszkiewicz, RS Harris, D Chen, ... Proceedings of the National Academy of Sciences 117 (42), 26273-26280, 2020 | 35 | 2020 |
Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes R Vegesna, M Tomaszkiewicz, P Medvedev, KD Makova PLoS genetics 15 (9), e1008369, 2019 | 27 | 2019 |
Correcting palindromes in long reads after whole-genome amplification S Warris, E Schijlen, H Van De Geest, R Vegesna, T Hesselink, ... BMC genomics 19, 1-12, 2018 | 24 | 2018 |
PERCEPTION predicts patient response and resistance to treatment using single-cell transcriptomics of their tumors S Sinha, R Vegesna, S Mukherjee, AV Kammula, SR Dhruba, W Wu, ... Nature Cancer 5 (6), 938-952, 2024 | 21 | 2024 |
The landscape of receptor-mediated precision cancer combination therapy via a single-cell perspective S Ahmadi, P Sukprasert, R Vegesna, S Sinha, F Schischlik, N Artzi, ... Nature communications 13 (1), 1613, 2022 | 19 | 2022 |
Ampliconic genes on the great ape Y chromosomes: rapid evolution of copy number but conservation of expression levels R Vegesna, M Tomaszkiewicz, OA Ryder, R Campos-Sánchez, ... Genome biology and evolution 12 (6), 842-859, 2020 | 18 | 2020 |
O Neill, BP CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ... Foltz, G, 462-477, 2013 | 11 | 2013 |
Predicting patient treatment response and resistance via single-cell transcriptomics of their tumors S Sinha, R Vegesna, SR Dhruba, W Wu, DL Kerr, OV Stroganov, ... bioRxiv, 2022.01. 11.475728, 2022 | 3 | 2022 |
OB P, G CW Brennan, RG Verhaak, M Aaron, B Campos, H Noushmehr, ... Foltz, J. Myers, DJ Weisenberger, R. Penny, R. Kucherlapati, CM Perou, D …, 2013 | 3 | 2013 |
Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results DT Yehdego, B Zhang, M Taufer, VKR Kodimala, R Vegesna, ... Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012 | 3 | 2012 |