| Rfam 14: expanded coverage of metagenomic, viral and microRNA families I Kalvari, EP Nawrocki, N Ontiveros-Palacios, J Argasinska, K Lamkiewicz, ... Nucleic acids research 49 (D1), D192-D200, 2021 | 806 | 2021 |
| Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis A Viehweger, S Krautwurst, K Lamkiewicz, R Madhugiri, J Ziebuhr, ... Genome research 29 (9), 1545-1554, 2019 | 257 | 2019 |
| Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ... Briefings in Bioinformatics 22 (2), 642-663, 2021 | 162 | 2021 |
| Structural and functional conservation of cis-acting RNA elements in coronavirus 5'-terminal genome regions R Madhugiri, N Karl, D Petersen, K Lamkiewicz, M Fricke, U Wend, ... Virology 517, 44-55, 2018 | 94 | 2018 |
| A CRISPR activation screen identifies genes that protect against Zika virus infection A Dukhovny, K Lamkiewicz, Q Chen, M Fricke, N Jabrane-Ferrat, M Marz, ... Journal of virology 93 (16), 10.1128/jvi. 00211-19, 2019 | 69 | 2019 |
| Comparative Genome Analysis of 33 Chlamydia Strains Reveals Characteristic Features of Chlamydia Psittaci and Closely Related Species M Hölzer, LM Barf, K Lamkiewicz, F Vorimore, M Lataretu, A Favaroni, ... Pathogens 9 (11), 899, 2020 | 34 | 2020 |
| Virus bioinformatics N Pappas, S Roux, M Hölzer, K Lamkiewicz, F Mock, M Marz, BE Dutilh Encyclopedia of virology, 124, 2021 | 22 | 2021 |
| A genome‐wide CRISPR activation screen reveals Hexokinase 1 as a critical factor in promoting resistance to multi‐kinase inhibitors in hepatocellular carcinoma cells S Sofer, K Lamkiewicz, S Armoza Eilat, S Partouche, M Marz, N Moskovits, ... The FASEB Journal 36 (3), e22191, 2022 | 20 | 2022 |
| Structure and hierarchy of influenza virus models revealed by reaction network analysis S Peter, M Hölzer, K Lamkiewicz, PS di Fenizio, H Al Hwaeer, M Marz, ... Viruses 11 (5), 449, 2019 | 18 | 2019 |
| Comparative Study of Ten Thogotovirus Isolates and Their Distinct In Vivo Characteristics J Fuchs, K Lamkiewicz, L Kolesnikova, M Hölzer, M Marz, G Kochs Journal of Virology 96 (5), e01556-21, 2022 | 16 | 2022 |
| Genomic analysis of 61 Chlamydia psittaci strains reveals extensive divergence associated with host preference K Sachse, M Hölzer, F Vorimore, LM Barf, C Sachse, K Laroucau, M Marz, ... BMC genomics 24 (1), 288, 2023 | 14* | 2023 |
| Comprehensive survey of conserved RNA secondary structures in full-genome alignment of Hepatitis C virus S Triebel, K Lamkiewicz, N Ontiveros, B Sweeney, PF Stadler, AI Petrov, ... Scientific Reports 14 (1), 15145, 2024 | 9 | 2024 |
| HIV-1 lethality and loss of Env protein expression induced by single synonymous substitutions in the virus genome intronic-splicing silencer A Jordan-Paiz, M Nevot, K Lamkiewicz, M Lataretu, S Franco, M Marz, ... Journal of Virology 94 (21), 10.1128/jvi. 01108-20, 2020 | 9 | 2020 |
| Genome structure, life cycle, and taxonomy of coronaviruses and the evolution of SARS-CoV-2 K Lamkiewicz, LR Esquivel Gomez, D Kühnert, M Marz Viral Fitness and Evolution: Population Dynamics and Adaptive Mechanisms …, 2023 | 8 | 2023 |
| The international virus bioinformatics meeting 2020 F Hufsky, N Beerenwinkel, IM Meyer, S Roux, GM Cook, CM Kinsella, ... Viruses 12 (12), 1398, 2020 | 6 | 2020 |
| A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes NF Mostajo, M Lataretu, S Krautwurst, F Mock, D Desirò, K Lamkiewicz, ... NAR genomics and bioinformatics 2 (1), lqz006, 2020 | 6* | 2020 |
| Sequential disruption of SPLASH-identified vRNA–vRNA interactions challenges their role in influenza A virus genome packaging C Jakob, GL Lovate, D Desirò, L Gießler, RP Smyth, R Marquet, ... Nucleic Acids Research 51 (12), 6479-6494, 2023 | 5 | 2023 |
| The third annual meeting of the european virus bioinformatics center F Hufsky, B Ibrahim, S Modha, MRJ Clokie, S Deinhardt-Emmer, BE Dutilh, ... Viruses 11 (5), 420, 2019 | 4 | 2019 |
| RIBAP: a comprehensive bacterial core genome annotation pipeline for pangenome calculation beyond the species level K Lamkiewicz, LM Barf, K Sachse, M Hölzer Genome Biology 25 (1), 170, 2024 | 2 | 2024 |
| The International Virus Bioinformatics Meeting 2023 F Hufsky, AB Abecasis, A Babaian, S Beck, L Brierley, S Dellicour, ... Viruses 15 (10), 2031, 2023 | 1 | 2023 |
