| Repair of double-strand breaks induced by CRISPR–Cas9 leads to large deletions and complex rearrangements M Kosicki, K Tomberg, A Bradley Nature biotechnology 36 (8), 765-771, 2018 | 1942 | 2018 |
| Predicting the mutations generated by repair of Cas9-induced double-strand breaks F Allen, L Crepaldi, C Alsinet, AJ Strong, V Kleshchevnikov, P De Angeli, ... Nature biotechnology 37 (1), 64-72, 2019 | 521 | 2019 |
| FoxA1 directs the lineage and immunosuppressive properties of a novel regulatory T cell population in EAE and MS Y Liu, R Carlsson, M Comabella, JY Wang, M Kosicki, B Carrion, M Hasan, ... Nature medicine 20 (3), 272-282, 2014 | 171 | 2014 |
| Inter-homologue repair in fertilized human eggs? D Egli, MV Zuccaro, M Kosicki, GM Church, A Bradley, M Jasin Nature 560 (7717), E5-E7, 2018 | 133 | 2018 |
| Cas9-induced large deletions and small indels are controlled in a convergent fashion M Kosicki, F Allen, F Steward, K Tomberg, Y Pan, A Bradley Nature communications 13 (1), 3422, 2022 | 78 | 2022 |
| Dynamics of indel profiles induced by various CRISPR/Cas9 delivery methods M Kosicki, SS Rajan, FC Lorenzetti, HH Wandall, Y Narimatsu, ... Progress in molecular biology and translational science 152, 49-67, 2017 | 35 | 2017 |
| Genome-wide fetalization of enhancer architecture in heart disease CH Spurrell, I Barozzi, M Kosicki, BJ Mannion, MJ Blow, ... Cell reports 40 (12), 2022 | 27 | 2022 |
| Noncoding variants alter GATA2 expression in rhombomere 4 motor neurons and cause dominant hereditary congenital facial paresis AP Tenney, SA Di Gioia, BD Webb, WM Chan, E de Boer, SJ Garnai, ... Nature Genetics 55 (7), 1149-1163, 2023 | 12 | 2023 |
| Rare variation in non-coding regions with evolutionary signatures contributes to autism spectrum disorder risk T Shin, JHT Song, M Kosicki, C Kenny, SG Beck, L Kelley, I Antony, ... Cell Genomics 4 (8), 2024 | 11 | 2024 |
| Mutations generated by repair of Cas9-induced double strand breaks are predictable from surrounding sequence F Allen, L Crepaldi, C Alsinet, AJ Strong, V Kleshchevnikov, PD Angeli, ... bioRxiv, 400341, 2018 | 9 | 2018 |
| Dynamic enhancer landscapes in human craniofacial development SS Rajderkar, K Paraiso, ML Amaral, M Kosicki, LE Cook, F Darbellay, ... Nature communications 15 (1), 2030, 2024 | 7 | 2024 |
| A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival S Abassah-Oppong, M Zoia, BJ Mannion, R Rouco, V Tissières, ... Nature Communications 15 (1), 8793, 2024 | 4 | 2024 |
| Massively parallel reporter assays and mouse transgenic assays provide complementary information about neuronal enhancer activity M Kosicki, DL Cintrón, NF Page, I Georgakopoulos-Soares, JA Akiyama, ... bioRxiv, 2024 | 4 | 2024 |
| Chondrogenic Enhancer Landscape of Limb and Axial Skeleton Development F Darbellay, A Ramisch, L Lopez-Delisle, M Kosicki, A Visel, G Andrey bioRxiv, 2023.05. 10.539849, 2023 | 3 | 2023 |
| VISTA Enhancer browser: an updated database of tissue-specific developmental enhancers M Kosicki, FA Baltoumas, G Kelman, J Boverhof, Y Ong, LE Cook, ... Nucleic Acids Research 53 (D1), D324-D330, 2025 | 2 | 2025 |
| ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and … A Pampari, A Shcherbina, EZ Kvon, M Kosicki, S Nair, S Kundu, ... bioRxiv, 2024.12. 25.630221, 2024 | 2 | 2024 |
| The interplay of DNA repair context with target sequence predictably biases Cas9-generated mutations A Pallaseni, EM Peets, G Girling, L Crepaldi, I Kuzmin, M Moor, ... Nature Communications 15 (1), 10271, 2024 | 2 | 2024 |
| Molecular convergence of risk variants for congenital heart defects leveraging a regulatory map of the human fetal heart XR Ma, SD Conley, M Kosicki, D Bredikhin, R Cui, S Tran, MU Sheth, ... medRxiv, 2024.11. 20.24317557, 2024 | 2 | 2024 |
| Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development F Darbellay, A Ramisch, L Lopez-Delisle, M Kosicki, A Rauseo, Z Jouini, ... Nature Communications 15 (1), 4820, 2024 | 2 | 2024 |
| Mutagenesis Sensitivity Mapping of Human Enhancers In Vivo M Kosicki, B Zhang, A Pampari, JA Akiyama, I Plajzer-Frick, CS Novak, ... bioRxiv, 2024 | 1 | 2024 |