Democratising deep learning for microscopy with ZeroCostDL4Mic L von Chamier, RF Laine, J Jukkala, C Spahn, D Krentzel, E Nehme, ... Nature communications 12 (1), 2276, 2021 | 460 | 2021 |
napari: a multi-dimensional image viewer for Python N Sofroniew, T Lambert, K Evans, J Nunez-Iglesias, G Bokota, P Winston, ... Zenodo, 2022 | 154 | 2022 |
DaXi—high-resolution, large imaging volume and multi-view single-objective light-sheet microscopy B Yang, M Lange, A Millett-Sikking, X Zhao, J Bragantini, S VijayKumar, ... Nature methods 19 (4), 461-469, 2022 | 106 | 2022 |
OME-Zarr: a cloud-optimized bioimaging file format with international community support J Moore, D Basurto-Lozada, S Besson, J Bogovic, J Bragantini, EM Brown, ... Histochemistry and Cell Biology 160 (3), 223-251, 2023 | 74 | 2023 |
napari: a multi-dimensional image viewer for Python J Ahlers, DA Moré, O Amsalem, A Anderson, G Bokota, P Boone, ... Zenodo, 1-2, 2023 | 59 | 2023 |
ZeroCostDL4Mic: an open platform to use Deep-Learning in Microscopy L Chamier, RF Laine, J Jukkala, C Spahn, D Krentzel, E Nehme, ... BioRxiv, 2020.03. 20.000133, 2020 | 55 | 2020 |
Zebrahub–Multimodal zebrafish developmental atlas reveals the State-transition dynamics of late-vertebrate pluripotent axial progenitors M Lange, A Granados, S VijayKumar, J Bragantini, S Ancheta, ... BioRxiv, 2023.03. 06.531398, 2023 | 49 | 2023 |
napari/napari: 0.3. 5 N Sofroniew, T Lambert, K Evans, J Nunez-Iglesias, AC Solak, ... Zenodo, 2020 | 21 | 2020 |
High-resolution, large imaging volume, and multi-view single objective light-sheet microscopy B Yang, M Lange, A Millett-Sikking, AC Solak, SV Kumar, W Wang, ... BioRxiv, 2020.09. 22.309229, 2020 | 20 | 2020 |
Image deconvolution via noise-tolerant self-supervised inversion H Kobayashi, AC Solak, J Batson, LA Royer arXiv preprint arXiv:2006.06156, 2020 | 13 | 2020 |
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ZAF, the first open source fully automated feeder for aquatic facilities M Lange, AC Solak, S Vijay Kumar, H Kobayashi, B Yang, LA Royer Elife 10, e74234, 2021 | 9 | 2021 |
A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors M Lange, A Granados, S VijayKumar, J Bragantini, S Ancheta, YJ Kim, ... Cell 187 (23), 6742-6759. e17, 2024 | 5 | 2024 |
PCM1 conveys centrosome asymmetry to polarized endosome dynamics in regulating daughter cell fate X Zhao, Y Wang, V Mouilleau, AC Solak, J Garcia, X Chen, CJ Wilkinson, ... bioRxiv, 2024.06. 17.599416, 2024 | 1 | 2024 |
Antibody Library Design by Seeding Linear Programming with Inverse Folding and Protein Language Models CF Hayes, SA Magana-Zook, A Gonçalves, AC Solak, D Faissol, ... bioRxiv, 2024.11. 03.621763, 2024 | | 2024 |
ortho_seqs: A Python tool for sequence analysis and higher order sequence–phenotype mapping S Nafees, VN Pranathi Vemuri, M Woollacott, AC Solak, P Logan, ... bioRxiv, 2022.09. 14.506443, 2022 | | 2022 |