Підписатись
Jeffrey M. Granja
Jeffrey M. Granja
Computational Biologist, Cartography Bio
Підтверджена електронна адреса в stanford.edu
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Посилання
Посилання
Рік
Clonal replacement of tumor-specific T cells following PD-1 blockade
KE Yost*, AT Satpathy*, DK Wells, Y Qi, C Wang, R Kageyama, ...
bioRxiv, 648899, 2019
12992019
The chromatin accessibility landscape of primary human cancers
MR Corces*, JM Granja*, S Shams, BH Louie, JA Seoane, W Zhou, ...
Science 362 (6413), eaav1898, 2018
11012018
ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
JM Granja*, MR Corces*, SE Pierce, ST Bagdatli, H Choudhry, HY Chang, ...
Nature genetics 53 (3), 403-411, 2021
9552021
Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
AT Satpathy*, JM Granja*, KE Yost, Y Qi, F Meschi, GP McDermott, ...
Nature biotechnology, 610550, 2019
8152019
c-Jun overexpression in CAR T cells induces exhaustion resistance
RC Lynn, EW Weber, E Sotillo, D Gennert, P Xu, Z Good, H Anbunathan, ...
Nature 576 (7786), 293-300, 2019
7222019
Circular ecDNA promotes accessible chromatin and high oncogene expression
S Wu, KM Turner, N Nguyen, R Raviram, M Erb, J Santini, J Luebeck, ...
Nature 575 (7784), 699-703, 2019
4912019
Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements
MR Mumbach*, AT Satpathy*, EA Boyle*, C Dai*, BG Gowen, SW Cho, ...
Nature genetics 49 (11), 1602, 2017
4912017
Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia
JM Granja*, S Klemm*, LM McGinnis*, AS Kathiria, A Mezger, MR Corces, ...
Nature biotechnology 37 (12), 1458-1465, 2019
4302019
Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases
MR Corces, A Shcherbina, S Kundu, MJ Gloudemans, L Frésard, ...
Nature genetics 52 (11), 1158-1168, 2020
3112020
ecDNA hubs drive cooperative intermolecular oncogene expression
KL Hung, KE Yost, L Xie, Q Shi, K Helmsauer, J Luebeck, R Schöpflin, ...
Nature 600 (7890), 731-736, 2021
2222021
Entropy in molecular recognition by proteins
JA Caro*, KW Harpole*, V Kasinath*, J Lim*, J Granja, KG Valentine, ...
Proceedings of the National Academy of Sciences 114 (25), 6563-6568, 2017
1762017
GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways
E López-Isac, M Acosta-Herrera, M Kerick, S Assassi, AT Satpathy, ...
Nature communications 10 (1), 4955, 2019
1672019
Cryptic activation of an Irf8 enhancer governs cDC1 fate specification
V Durai, P Bagadia, JM Granja, AT Satpathy, DH Kulkarni, JT Davidson IV, ...
Nature immunology 20 (9), 1161-1173, 2019
1522019
Intertumoral heterogeneity in SCLC is influenced by the cell type of origin
D Yang, SK Denny, PG Greenside, AC Chaikovsky, JJ Brady, Y Ouadah, ...
Cancer discovery 8 (10), 1316-1331, 2018
1422018
Transcript-indexed ATAC-seq for precision immune profiling
AT Satpathy*, N Saligrama*, JD Buenrostro*, Y Wei, B Wu, AJ Rubin, ...
Nature medicine 24 (5), 580, 2018
1362018
High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer
SE Pierce, JM Granja, WJ Greenleaf
Nature communications 12 (1), 2969, 2021
1232021
An Nfil3Zeb2Id2 pathway imposes Irf8 enhancer switching during cDC1 development
P Bagadia, X Huang, TT Liu, V Durai, GE Grajales-Reyes, M Nitschké, ...
Nature immunology 20 (9), 1174-1185, 2019
1132019
HiChIRP reveals RNA-associated chromosome conformation
MR Mumbach*, JM Granja*, RA Flynn, CM Roake, AT Satpathy, AJ Rubin, ...
Nature methods, 1, 2019
932019
Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation
K Kraft, KE Yost, SE Murphy, A Magg, Y Long, MR Corces, JM Granja, ...
Proceedings of the National Academy of Sciences 119 (22), e2201883119, 2022
662022
Dynamic chromatin regulatory landscape of human CAR T cell exhaustion
DG Gennert, RC Lynn, JM Granja, EW Weber, MR Mumbach, Y Zhao, ...
Proceedings of the National Academy of Sciences 118 (30), e2104758118, 2021
562021
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