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Adam Feist
Adam Feist
UC San Diego (UCSD) / Technical University of Denmark (DTU)
Підтверджена електронна адреса в ucsd.edu - Домашня сторінка
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Посилання
Рік
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information
AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ...
Molecular systems biology 3 (1), 121, 2007
17672007
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0
J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ...
Nature protocols 6 (9), 1290-1307, 2011
16602011
A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011
JD Orth, TM Conrad, J Na, JA Lerman, H Nam, AM Feist, BØ Palsson
Molecular systems biology 7 (1), 535, 2011
13302011
Reconstruction of biochemical networks in microorganisms
AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson
Nature Reviews Microbiology 7 (2), 129-143, 2009
11232009
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox
SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard
Nature protocols 2 (3), 727-738, 2007
10742007
The biomass objective function
AM Feist, BO Palsson
Current opinion in microbiology 13 (3), 344-349, 2010
7782010
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
AM Feist, BØ Palsson
Nature biotechnology 26 (6), 659-667, 2008
6972008
Tracing compartmentalized NADPH metabolism in the cytosol and mitochondria of mammalian cells
CA Lewis, SJ Parker, BP Fiske, D McCloskey, DY Gui, CR Green, ...
Molecular cell 55 (2), 253-263, 2014
6302014
iML1515, a knowledgebase that computes Escherichia coli traits
JM Monk, CJ Lloyd, E Brunk, N Mih, A Sastry, Z King, R Takeuchi, ...
Nature biotechnology 35 (10), 904-908, 2017
5532017
The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology
TE Sandberg, MJ Salazar, LL Weng, BO Palsson, AM Feist
Metabolic Engineering 56, 1-16, 2019
4562019
Basic and applied uses of genome‐scale metabolic network reconstructions of Escherichia coli
D McCloskey, BØ Palsson, AM Feist
Molecular systems biology 9 (1), 661, 2013
4272013
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
4192020
Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
JM Monk, P Charusanti, RK Aziz, JA Lerman, N Premyodhin, JD Orth, ...
Proceedings of the National Academy of Sciences 110 (50), 20338-20343, 2013
3402013
Modeling methanogenesis with a genome‐scale metabolic reconstruction of Methanosarcina barkeri
AM Feist, JCM Scholten, BØ Palsson, FJ Brockman, T Ideker
Molecular systems biology 2 (1), 2006.0004, 2006
3132006
Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli
AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ...
Metabolic engineering 12 (3), 173-186, 2010
3062010
Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium
RA LaCroix, TE Sandberg, EJ O'Brien, J Utrilla, A Ebrahim, GI Guzman, ...
Applied and environmental microbiology 81 (1), 17-30, 2015
2902015
A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology
A Bordbar, AM Feist, R Usaite-Black, J Woodcock, BO Palsson, I Famili
BMC systems biology 5, 1-17, 2011
2352011
Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network
J Lee, H Yun, AM Feist, BØ Palsson, SY Lee
Applied microbiology and biotechnology 80, 849-862, 2008
2232008
Next-generation genome-scale models for metabolic engineering
ZA King, CJ Lloyd, AM Feist, BO Palsson
Current opinion in biotechnology 35, 23-29, 2015
2172015
Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path
MA Campodonico, BA Andrews, JA Asenjo, BO Palsson, AM Feist
Metabolic engineering 25, 140-158, 2014
2012014
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Статті 1–20