| PyInteraph: a framework for the analysis of interaction networks in structural ensembles of proteins M Tiberti, G Invernizzi, M Lambrughi, Y Inbar, G Schreiber, E Papaleo Journal of chemical information and modeling 54 (5), 1537-1551, 2014 | 110 | 2014 |
| Disclosure of Key Stereoelectronic Factors for Efficient H2 Binding and Cleavage in the Active Site of [NiFe]-Hydrogenases M Bruschi, M Tiberti, A Guerra, L De Gioia Journal of the American Chemical Society 136 (5), 1803-1814, 2014 | 85 | 2014 |
| xPyder: a PyMOL plugin to analyze coupled residues and their networks in protein structures. M Pasi, M Tiberti, A Arrigoni, E Papaleo Journal of chemical information and modeling 52 (7), 1865-1874, 2012 | 85 | 2012 |
| ENCORE: Software for Quantitative Ensemble Comparison M Tiberti, E Papaleo, T Bengtsen, W Boomsma, K Lindorff-Larsen PLoS Comput Biol 11 (10), e1004415, 2015 | 83 | 2015 |
| E2 superfamily of ubiquitin-conjugating enzymes: constitutively active or activated through phosphorylation in the catalytic cleft I Valimberti, M Tiberti, M Lambrughi, B Sarcevic, E Papaleo Scientific reports 5, 2015 | 65 | 2015 |
| Dynamic properties of extremophilic subtilisin-like serine-proteases M Tiberti, E Papaleo Journal of structural biology 174 (1), 69-83, 2011 | 64 | 2011 |
| Molecular determinants of enzyme cold adaptation: comparative structural and computational studies of cold-and warm-adapted enzymes E Papaleo, M Tiberti, G Invernizzi, M Pasi, V Ranzani Current Protein and Peptide Science 12 (7), 657-683, 2011 | 54 | 2011 |
| MutateX: an automated pipeline for in-silico saturation mutagenesis of protein structures and structural ensembles M Tiberti, T Terkelsen, TC Cremers, M Di Marco, I da Piedade, E Maiani, ... BioRxiv, 824938, 2019 | 53 | 2019 |
| Evidence for the formation of a Mo–H intermediate in the catalytic cycle of formate dehydrogenase M Tiberti, E Papaleo, N Russo, L De Gioia, G Zampella Inorganic chemistry 51 (15), 8331-8339, 2012 | 46 | 2012 |
| Molecular dynamics of mesophilic-like mutants of a cold-adapted enzyme: insights into distal effects induced by the mutations E Papaleo, M Pasi, M Tiberti, L De Gioia PloS one 6 (9), e24214, 2011 | 46 | 2011 |
| Communication routes in ARID domains between distal residues in Helix 5 and the DNA-binding loops G Invernizzi, M Tiberti, M Lambrughi, K Lindorff-Larsen, E Papaleo PLoS computational biology 10 (9), e1003744, 2014 | 44 | 2014 |
| Mechanisms of intramolecular communication in a hyperthermophilic acylaminoacyl peptidase: a molecular dynamics investigation E Papaleo, G Renzetti, M Tiberti PloS one 7 (4), e35686, 2012 | 44 | 2012 |
| A comparative study of cold-and warm-adapted Endonucleases A using sequence analyses and molecular dynamics simulations D Michetti, BO Brandsdal, D Bon, GV Isaksen, M Tiberti, E Papaleo PloS one 12 (2), e0169586, 2017 | 41 | 2017 |
| RosettaDDGPrediction for high‐throughput mutational scans: from stability to binding V Sora, A Otamendi Laspiur, K Degn, M Arnaudi, M Utichi, L Beltrame, ... Protein Science, e4527, 2023 | 38 | 2023 |
| Computational structural biology of S-nitrosylation of cancer targets E Bignon, MF Allega, M Lucchetta, M Tiberti, E Papaleo Frontiers in Oncology 8, 272, 2018 | 38 | 2018 |
| The mutational landscape of the oncogenic MZF1 SCAN domain in cancer M Nygaard, T Terkelsen, AV Olsen, V Sora, JS Viloria, F Rizza, ... Frontiers in Molecular Biosciences 3, 2016 | 35 | 2016 |
| The conformational and mutational landscape of the ubiquitin-like marker for autophagosome formation in cancer BA Fas, E Maiani, V Sora, M Kumar, M Mashkoor, M Lambrughi, M Tiberti, ... Autophagy 17 (10), 2818-2841, 2021 | 27 | 2021 |
| Structure and dynamics in the ATG8 family from experimental to computational techniques V Sora, M Kumar, E Maiani, M Lambrughi, M Tiberti, E Papaleo Frontiers in Cell and Developmental Biology 8, 420, 2020 | 27 | 2020 |
| Allosteric modulation of cardiac myosin dynamics by omecamtiv mecarbil S Hashem, M Tiberti, A Fornili PLoS computational biology 13 (11), e1005826, 2017 | 26 | 2017 |
| eIF4A3 regulates the TFEB-mediated transcriptional response via GSK3B to control autophagy D Sakellariou, M Tiberti, TH Kleiber, L Blazquez, AR López, ... Cell Death & Differentiation 28 (12), 3344-3356, 2021 | 24 | 2021 |
