PRED-TMBB: a web server for predicting the topology of β-barrel outer membrane proteins PG Bagos, TD Liakopoulos, IC Spyropoulos, SJ Hamodrakas Nucleic acids research 32 (suppl_2), W400-W404, 2004 | 458 | 2004 |
Combined prediction of Tat and Sec signal peptides with hidden Markov models PG Bagos, EP Nikolaou, TD Liakopoulos, KD Tsirigos Bioinformatics 26 (22), 2811-2817, 2010 | 271 | 2010 |
A Hidden Markov Model method, capable of predicting and discriminating β-barrel outer membrane proteins PG Bagos, TD Liakopoulos, IC Spyropoulos, SJ Hamodrakas BMC bioinformatics 5 (1), 1-13, 2004 | 222 | 2004 |
TMRPres2D: high quality visual representation of transmembrane protein models IC Spyropoulos, TD Liakopoulos, PG Bagos, SJ Hamodrakas Bioinformatics 20 (17), 3258-3260, 2004 | 185 | 2004 |
Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model PG Bagos, KD Tsirigos, TD Liakopoulos, SJ Hamodrakas Journal of proteome research 7 (12), 5082-5093, 2008 | 148 | 2008 |
Evaluation of methods for predicting the topology of β-barrel outer membrane proteins and a consensus prediction method PG Bagos, TD Liakopoulos, SJ Hamodrakas BMC bioinformatics 6 (1), 1-13, 2005 | 142 | 2005 |
Evaluation of annotation strategies using an entire genome sequence I Iliopoulos, S Tsoka, MA Andrade, AJ Enright, M Carroll, P Poullet, ... Bioinformatics 19 (6), 717-726, 2003 | 122 | 2003 |
Prediction of signal peptides in archaea PG Bagos, KD Tsirigos, SK Plessas, TD Liakopoulos, SJ Hamodrakas Protein Engineering, Design & Selection 22 (1), 27-35, 2009 | 107 | 2009 |
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins PG Bagos, TD Liakopoulos, SJ Hamodrakas BMC bioinformatics 7 (1), 1-17, 2006 | 82 | 2006 |
Prediction of cell wall sorting signals in gram-positive bacteria with a hidden markov model: application to complete genomes ZI Litou, PG Bagos, KD Tsirigos, TD Liakopoulos, SJ Hamodrakas Journal of bioinformatics and computational biology 6 (02), 387-401, 2008 | 42 | 2008 |
CW-PRED: a HMM-based method for the classification of cell wall-anchored proteins of Gram-positive bacteria DK Fimereli, KD Tsirigos, ZI Litou, TD Liakopoulos, PG Bagos, ... Artificial Intelligence: Theories and Applications. 7th Hellenic Conference …, 2012 | 34 | 2012 |
Finding beta-barrel outer membrane proteins with a Markov Chain Model PG Bagos, TD Liakopoulos, SJ Hamodrakas WSEAS Transactions on Biology and Biomedicine 2 (1), 186-189, 2004 | 30 | 2004 |
A novel tool for the prediction of transmembrane protein topology based on a statistical analysis of the SwissProt database: the OrienTM algorithm TD Liakopoulos, C Pasquier, SJ Hamodrakas Protein engineering 14 (6), 387-390, 2001 | 28 | 2001 |
ExTopoDB: a database of experimentally derived topological models of transmembrane proteins GN Tsaousis, KD Tsirigos, XD Andrianou, TD Liakopoulos, PG Bagos, ... Bioinformatics 26 (19), 2490-2492, 2010 | 26 | 2010 |
waveTM: Wavelet-based transmembrane segment prediction EE Pashou, ZI Litou, TD Liakopoulos, SJ Hamodrakas In silico biology 4 (2), 127-131, 2004 | 23 | 2004 |
Faster gradient descent training of hidden Markov models, using individual learning rate adaptation PG Bagos, TD Liakopoulos, SJ Hamodrakas Grammatical Inference: Algorithms and Applications. 7th International …, 2004 | 20 | 2004 |
A multipoint method for meta‐analysis of genetic association studies PG Bagos, TD Liakopoulos Genetic epidemiology 34 (7), 702-715, 2010 | 11 | 2010 |
Meta-analysis of family-based and case-control genetic association studies that use the same cases PG Bagos, NL Dimou, TD Liakopoulos, GK Nikolopoulos Statistical Applications in Genetics and Molecular Biology 10 (1), 2011 | 8 | 2011 |
Maximum likelihood and conditional maximum likelihood learning algorithms for hidden Markov models with labeled data: application to transmembrane protein topology prediction PG Bagos, THD Liakopoulos, SJ Hamodrakas Computational Methods In Sciences And Engineering 2003, 47-55, 2003 | 5 | 2003 |
Prediction of beta-barrel Outer Membrane Proteins PG Bagos, TD Liakopoulos, VJ Promponas, SJ Hamodrakas Proceedings - Indian National Science Academy Part B 71 (1), 19, 2005 | 3 | 2005 |