| Twelve years of SAMtools and BCFtools P Danecek, JK Bonfield, J Liddle, J Marshall, V Ohan, MO Pollard, ... Gigascience 10 (2), giab008, 2021 | 8541* | 2021 |
| Finishing the euchromatic sequence of the human genome International Human Genome Sequencing Consortium Nature 431 (7011), 931-945, 2004 | 5401 | 2004 |
| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution Project management: Fulton Lucinda A. 1 Mardis Elaine R. 1 Wilson Richard K. 1 Nature 432 (7018), 695-716, 2004 | 3003 | 2004 |
| 2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans R Wilson, R Ainscough, K Anderson, C Baynes, M Berks, J Bonfield, ... Nature 368 (6466), 32-38, 1994 | 1854 | 1994 |
| The staden package, 1998 R Staden, KF Beal, JK Bonfield Bioinformatics methods and protocols, 115-130, 1999 | 1767 | 1999 |
| A new DNA sequence assembly program JK Bonfield, KF Smith, R Staden Nucleic acids research 23 (24), 4992-4999, 1995 | 1239 | 1995 |
| Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ... The Lancet Infectious Diseases 22 (1), 35-42, 2022 | 897 | 2022 |
| Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7 B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ... Cell reports 35 (13), 2021 | 469 | 2021 |
| Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ... The Lancet Public Health 6 (5), e335-e345, 2021 | 375 | 2021 |
| HTSlib: C library for reading/writing high-throughput sequencing data JK Bonfield, J Marshall, P Danecek, H Li, V Ohan, A Whitwham, T Keane, ... Gigascience 10 (2), giab007, 2021 | 278 | 2021 |
| Compression of FASTQ and SAM format sequencing data JK Bonfield, MV Mahoney PloS one 8 (3), e59190, 2013 | 249 | 2013 |
| Gap5—editing the billion fragment sequence assembly JK Bonfield, A Whitwham Bioinformatics 26 (14), 1699-1703, 2010 | 226 | 2010 |
| Analyzing sequences using the Staden package and EMBOSS R Staden, DP Judge, JK Bonfield Introduction to Bioinformatics: A Theoretical and practical approach, 393-410, 2003 | 216* | 2003 |
| GA4GH: International policies and standards for data sharing across genomic research and healthcare HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ... Cell genomics 1 (2), 2021 | 193 | 2021 |
| De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms F Giordano, L Aigrain, MA Quail, P Coupland, JK Bonfield, RM Davies, ... Scientific reports 7 (1), 3935, 2017 | 188 | 2017 |
| A genome-wide, end-sequenced 129Sv BAC library resource for targeting vector construction DJ Adams, MA Quail, T Cox, L Van Der Weyden, BD Gorick, Q Su, ... Genomics 86 (6), 753-758, 2005 | 172 | 2005 |
| Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant P Elliott, D Haw, H Wang, O Eales, CE Walters, KEC Ainslie, C Atchison, ... Science 374 (6574), eabl9551, 2021 | 135 | 2021 |
| Petabyte-scale innovations at the European Nucleotide Archive G Cochrane, R Akhtar, J Bonfield, L Bower, F Demiralp, N Faruque, ... Nucleic acids research 37 (suppl_1), D19-D25, 2009 | 132 | 2009 |
| Experiment files and their application during large-scale sequencing projects JK Bonfield, R Staden DNA sequence 6 (2), 109-117, 1996 | 110 | 1996 |
| Automated detection of point mutations using fluorescent sequence trace subtraction JK Bonfield, C Rada, R Staden Nucleic acids research 26 (14), 3404-3409, 1998 | 108 | 1998 |
