Підписатись
Simon Roux
Simon Roux
DOE Joint Genome Institute
Підтверджена електронна адреса в lbl.gov - Домашня сторінка
Назва
Посилання
Посилання
Рік
Microbiota transfer therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
DW Kang, JB Adams, AC Gregory, T Borody, L Chittick, A Fasano, ...
Microbiome 5, 1-16, 2017
14072017
VirSorter: mining viral signal from microbial genomic data
S Roux, F Enault, BL Hurwitz, MB Sullivan
PeerJ 3, e985, 2015
1111*2015
CheckV assesses the quality and completeness of metagenome-assembled viral genomes
S Nayfach, AP Camargo, F Schulz, E Eloe-Fadrosh, S Roux, NC Kyrpides
Nature biotechnology 39 (5), 578-585, 2021
11102021
Determinants of community structure in the global plankton interactome
G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ...
Science 348 (6237), 1262073, 2015
9402015
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
J Guo, B Bolduc, AA Zayed, A Varsani, G Dominguez-Huerta, TO Delmont, ...
Microbiome 9, 1-13, 2021
8152021
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
S Roux, JR Brum, BE Dutilh, S Sunagawa, MB Duhaime, A Loy, ...
Nature, 2016
8032016
Plankton networks driving carbon export in the oligotrophic ocean
L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ...
Nature 532 (7600), 465-470, 2016
7882016
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
H Bin Jang, B Bolduc, O Zablocki, JH Kuhn, S Roux, EM Adriaenssens, ...
Nature biotechnology 37 (6), 632-639, 2019
7692019
Marine DNA viral macro-and microdiversity from pole to pole
AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ...
Cell 177 (5), 1109-1123. e14, 2019
7382019
Patterns and ecological drivers of ocean viral communities
JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ...
Science 348 (6237), 1261498, 2015
7372015
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
7222021
DRAM for distilling microbial metabolism to automate the curation of microbiome function
M Shaffer, MA Borton, BB McGivern, AA Zayed, SL La Rosa, LM Solden, ...
Nucleic acids research 48 (16), 8883-8900, 2020
7092020
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
5692019
Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
S Roux, SJ Hallam, T Woyke, MB Sullivan
elife 4, e08490, 2015
4962015
Host-linked soil viral ecology along a permafrost thaw gradient
JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ...
Nature microbiology 3 (8), 870-880, 2018
491*2018
The IMG/M data management and analysis system v. 6.0: new tools and advanced capabilities
IMA Chen, K Chu, K Palaniappan, A Ratner, J Huang, M Huntemann, ...
Nucleic acids research 49 (D1), D751-D763, 2021
4322021
Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses
F Enault, A Briet, L Bouteille, S Roux, MB Sullivan, MA Petit
The ISME journal 11 (1), 237-247, 2017
3962017
Gene expression changes and community turnover differentially shape the global ocean metatranscriptome
G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ...
Cell 179 (5), 1068-1083. e21, 2019
3462019
Identification of mobile genetic elements with geNomad
AP Camargo, S Roux, F Schulz, M Babinski, Y Xu, B Hu, PSG Chain, ...
Nature Biotechnology 42 (8), 1303-1312, 2024
3232024
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
S Roux, D Páez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, ...
Nucleic acids research 49 (D1), D764-D775, 2021
3052021
У даний момент система не може виконати операцію. Спробуйте пізніше.
Статті 1–20