Super-resolution imaging reveals distinct chromatin folding for different epigenetic states AN Boettiger, B Bintu, JR Moffitt, S Wang, BJ Beliveau, G Fudenberg, ... Nature 529 (7586), 418-422, 2016 | 892 | 2016 |
Spatial organization of chromatin domains and compartments in single chromosomes S Wang, JH Su, BJ Beliveau, B Bintu, JR Moffitt, C Wu, X Zhuang Biophysical Journal 112 (3), 217a, 2017 | 682 | 2017 |
Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes BJ Beliveau, EF Joyce, N Apostolopoulos, F Yilmaz, CY Fonseka, ... Proceedings of the National Academy of Sciences 109 (52), 21301-21306, 2012 | 487 | 2012 |
Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes BJ Beliveau, AN Boettiger, MS Avendaño, R Jungmann, RB McCole, ... Nature communications 6 (1), 7147, 2015 | 400 | 2015 |
Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues SK Saka, Y Wang, JY Kishi, A Zhu, Y Zeng, W Xie, K Kirli, C Yapp, ... Nature biotechnology 37 (9), 1080-1090, 2019 | 397 | 2019 |
SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues JY Kishi, SW Lapan, BJ Beliveau, ER West, A Zhu, HM Sasaki, SK Saka, ... Nature methods 16 (6), 533-544, 2019 | 376 | 2019 |
Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling G Nir, I Farabella, C Pérez Estrada, CG Ebeling, BJ Beliveau, HM Sasaki, ... PLoS genetics 14 (12), e1007872, 2018 | 258 | 2018 |
OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes BJ Beliveau, JY Kishi, G Nir, HM Sasaki, SK Saka, SC Nguyen, C Wu, ... Proceedings of the National Academy of Sciences 115 (10), E2183-E2192, 2018 | 222 | 2018 |
Multiplexed 3D super-resolution imaging of whole cells using spinning disk confocal microscopy and DNA-PAINT F Schueder, J Lara-Gutiérrez, BJ Beliveau, SK Saka, HM Sasaki, ... Nature communications 8 (1), 2090, 2017 | 166 | 2017 |
Islands of retroelements are major components of Drosophila centromeres CH Chang, A Chavan, J Palladino, X Wei, NMC Martins, B Santinello, ... PLoS biology 17 (5), e3000241, 2019 | 153 | 2019 |
3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing HQ Nguyen, S Chattoraj, D Castillo, SC Nguyen, G Nir, A Lioutas, ... Nature methods 17 (8), 822-832, 2020 | 139 | 2020 |
A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues AK Glaser, KW Bishop, LA Barner, EA Susaki, SI Kubota, G Gao, ... Nature methods 19 (5), 613-619, 2022 | 122 | 2022 |
Scalable amplification of strand subsets from chip-synthesized oligonucleotide libraries TL Schmidt, BJ Beliveau, YO Uca, M Theilmann, F Da Cruz, CT Wu, ... Nature communications 6 (1), 8634, 2015 | 96 | 2015 |
Germline Progenitors Escape the Widespread Phenomenon of Homolog Pairing during Drosophila Development EF Joyce, N Apostolopoulos, BJ Beliveau, C Wu PLoS genetics 9 (12), e1004013, 2013 | 87 | 2013 |
In situ super-resolution imaging of genomic DNA with OligoSTORM and OligoDNA-PAINT BJ Beliveau, AN Boettiger, G Nir, B Bintu, P Yin, X Zhuang, C Wu Super-resolution microscopy: methods and protocols, 231-252, 2017 | 85 | 2017 |
Optimized single-nucleus transcriptional profiling by combinatorial indexing BK Martin, C Qiu, E Nichols, M Phung, R Green-Gladden, S Srivatsan, ... Nature protocols 18 (1), 188-207, 2023 | 80* | 2023 |
Visualizing genomes with Oligopaint FISH probes BJ Beliveau, N Apostolopoulos, C Wu Current protocols in molecular biology 105 (1), 14.23. 1-14.23. 20, 2014 | 76 | 2014 |
Multiplexed signal amplification JY Kishi, B Beliveau, P Yin, Y Wang, SK Saka US Patent 11,492,661, 2022 | 64 | 2022 |
PaintSHOP enables the interactive design of transcriptome-and genome-scale oligonucleotide FISH experiments EA Hershberg, JL Close, CK Camplisson, S Attar, R Chern, Y Liu, ... Nature methods 18, 937–944, 2021 | 59 | 2021 |
Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project J Dekker, F Alber, S Aufmkolk, BJ Beliveau, BG Bruneau, AS Belmont, ... Molecular cell 83 (15), 2624-2640, 2023 | 58 | 2023 |