| Ribosomal Database Project: data and tools for high throughput rRNA analysis JR Cole, Q Wang, JA Fish, B Chai, DM McGarrell, Y Sun, CT Brown, ... Nucleic acids research 42 (D1), D633-D642, 2014 | 4598 | 2014 |
| FunGene: the functional gene pipeline and repository JA Fish, B Chai, Q Wang, Y Sun, CT Brown, JM Tiedje, JR Cole Frontiers in microbiology 4, 291, 2013 | 641 | 2013 |
| MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations MS Campbell, MY Law, C Holt, JC Stein, GD Moghe, DE Hufnagel, J Lei, ... Plant physiology 164 (2), 513-524, 2014 | 442 | 2014 |
| Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779 A Vieler, G Wu, CH Tsai, B Bullard, AJ Cornish, C Harvey, IB Reca, ... PLoS genetics 8 (11), e1003064, 2012 | 438 | 2012 |
| Ecological Patterns of nifH Genes in Four Terrestrial Climatic Zones Explored with Targeted Metagenomics Using FrameBot, a New Informatics Tool Q Wang, JF Quensen III, JA Fish, T Kwon Lee, Y Sun, JM Tiedje, JR Cole MBio 4 (5), 10.1128/mbio. 00592-13, 2013 | 317 | 2013 |
| Designing seeds for similarity search in genomic DNA J Buhler, U Keich, Y Sun Proceedings of the seventh annual international conference on Research in …, 2003 | 197 | 2003 |
| Reconstructing 16S rRNA genes in metagenomic data C Yuan, J Lei, J Cole, Y Sun Bioinformatics 31 (12), i35-i43, 2015 | 173 | 2015 |
| Artificial intelligence in meta-optics MK Chen, X Liu, Y Sun, DP Tsai Chemical Reviews 122 (19), 15356-15413, 2022 | 152 | 2022 |
| Designing multiple simultaneous seeds for DNA similarity search Y Sun, J Buhler Proceedings of the eighth annual international conference on Research in …, 2004 | 133 | 2004 |
| miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data J Lei, Y Sun Bioinformatics 30 (19), 2837-2839, 2014 | 120 | 2014 |
| LncRNA-ID: Long non-coding RNA IDentification using balanced random forests R Achawanantakun, J Chen, Y Sun, Y Zhang Bioinformatics 31 (24), 3897-3905, 2015 | 111 | 2015 |
| Xander: employing a novel method for efficient gene-targeted metagenomic assembly Q Wang, JA Fish, M Gilman, Y Sun, CT Brown, JM Tiedje, JR Cole Microbiome 3, 1-13, 2015 | 106 | 2015 |
| PhaTYP: predicting the lifestyle for bacteriophages using BERT J Shang, X Tang, Y Sun Briefings in Bioinformatics 24 (1), bbac487, 2023 | 98 | 2023 |
| Bacteriophage classification for assembled contigs using graph convolutional network J Shang, J Jiang, Y Sun Bioinformatics 37 (Supplement_1), i25-i33, 2021 | 98 | 2021 |
| FunGene: the functional gene pipeline and repository. Front Microbiol 4: 291 JA Fish, B Chai, Q Wang, Y Sun, CT Brown, JM Tiedje, JR Cole | 87 | 2013 |
| Phage family classification under Caudoviricetes: A review of current tools using the latest ICTV classification framework Y Zhu, J Shang, C Peng, Y Sun Frontiers in microbiology 13, 1032186, 2022 | 77 | 2022 |
| HMM-FRAME: accurate protein domain classification for metagenomic sequences containing frameshift errors Y Zhang, Y Sun BMC bioinformatics 12, 1-10, 2011 | 74 | 2011 |
| The insect-phase gRNA transcriptome in Trypanosoma brucei D Koslowsky, Y Sun, J Hindenach, T Theisen, J Lucas Nucleic acids research 42 (3), 1873-1886, 2014 | 72 | 2014 |
| Global prevalence of SARS-CoV-2 3CL protease mutations associated with nirmatrelvir or ensitrelvir resistance JD Ip, AWH Chu, WM Chan, RCY Leung, SMU Abdullah, Y Sun, KKW To EBioMedicine 91, 2023 | 66 | 2023 |
| CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning J Shang, Y Sun Methods 189, 95-103, 2021 | 57 | 2021 |
Jiayu ShangThe Chinese University of Hong KongEmail được xác minh tại cuhk.edu.hk