Theo dõi
Benjamin Doughty
Benjamin Doughty
Stanford University
Email được xác minh tại stanford.edu
Tiêu đề
Trích dẫn bởi
Trích dẫn bởi
Năm
Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations
CP Fulco, J Nasser, TR Jones, G Munson, DT Bergman, V Subramanian, ...
Nature genetics 51 (12), 1664-1669, 2019
8902019
Genome-wide enhancer maps link risk variants to disease genes
J Nasser, DT Bergman, CP Fulco, P Guckelberger, BR Doughty, ...
Nature 593 (7858), 238-243, 2021
5132021
An encyclopedia of enhancer-gene regulatory interactions in the human genome
AR Gschwind, KS Mualim, A Karbalayghareh, MU Sheth, KK Dey, ...
bioRxiv, 2023
382023
HyPR-seq: single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes
JL Marshall, BR Doughty, V Subramanian, P Guckelberger, Q Wang, ...
Proceedings of the National Academy of Sciences 117 (52), 33404-33413, 2020
322020
Multicenter integrated analysis of noncoding CRISPRi screens
D Yao, J Tycko, JW Oh, LR Bounds, SJ Gosai, L Lataniotis, ...
Nature methods 21 (4), 723-734, 2024
282024
Rewriting regulatory DNA to dissect and reprogram gene expression
GE Martyn, MT Montgomery, H Jones, K Guo, BR Doughty, J Linder, ...
bioRxiv, 2023
142023
Genome-wide maps of enhancer regulation connect risk variants to disease genes
J Nasser, DT Bergman, CP Fulco, P Guckelberger, BR Doughty, ...
bioRxiv, 2020.09. 01.278093, 2020
142020
Single-molecule chromatin configurations link transcription factor binding to expression in human cells
BR Doughty, MM Hinks, JM Schaepe, GK Marinov, AR Thurm, ...
bioRxiv, 2024
102024
Cohesin-mediated 3D contacts tune enhancer-promoter regulation
P Guckelberger, BR Doughty, G Munson, SSP Rao, Y Tan, XS Cai, ...
bioRxiv, 2024.07. 12.603288, 2024
62024
Single-cell chromatin state transitions during epigenetic memory formation
T Fujimori, C Rios-Martinez, AR Thurm, MM Hinks, BR Doughty, J Sinha, ...
BioRxiv, 2023
52023
Single-molecule states link transcription factor binding to gene expression
BR Doughty, MM Hinks, JM Schaepe, GK Marinov, AR Thurm, ...
Nature, 1-10, 2024
32024
The landscape of the histone-organized chromatin of Bdellovibrionota bacteria
GK Marinov, B Doughty, A Kundaje, WJ Greenleaf
bioRxiv, 2023
12023
HyPR Protocol
J Marshall, BR Doughty, V Subramanian, P Guckelberger, Q Wang, ...
12020
Pioneering a biobased uas
E Block, J Byemerwa, R Dispenza, B Doughty, KN Gillyard, P Godbole, ...
Institute of Biological Engineering (IBE) Annual Conference, 2015
12015
Thermodynamic principles link in vitro transcription factor affinities to single-molecule chromatin states in cells
JM Schaepe, T Fries, BR Doughty, OJ Crocker, MM Hinks, E Marklund, ...
bioRxiv, 2025.01. 27.635162, 2025
2025
The chromatin landscape of the histone-possessing Bacteriovorax bacteria
GK Marinov, B Doughty, A Kundaje, WJ Greenleaf
Genome Research 35 (1), 109-123, 2025
2025
CRISPRi of regulatory elements upon degron operation (CRUDO)
P Guckelberger, BR Doughty, G Munson, CP Fulco, DT Bergman, J Ray, ...
2024
Towards a Biosynthetic UAV
E Block, J Byemerwa, R Dispenza, B Doughty, KN Gillyard, P Godbole, ...
Advanced Studies Laboratories Poster Session, 2014
2014
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Bài viết 1–18