| Estimating contemporary effective population size in non-model species using linkage disequilibrium across thousands of loci RK Waples, WA Larson, RS Waples Heredity 117 (4), 233-240, 2016 | 246 | 2016 |
| Paralogs are revealed by proportion of heterozygotes and deviations in read ratios in genotyping‐by‐sequencing data from natural populations GJ McKinney, RK Waples, LW Seeb, JE Seeb Molecular Ecology Resources 17 (4), 656-669, 2017 | 245 | 2017 |
| Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha) WA Larson, LW Seeb, MV Everett, RK Waples, WD Templin, JE Seeb Evolutionary Applications 7 (3), 355-369, 2014 | 241 | 2014 |
| A resurrection study reveals rapid adaptive evolution within populations of an invasive plant SE Sultan, T Horgan‐Kobelski, LM Nichols, CE Riggs, RK Waples Evolutionary Applications 6 (2), 266-278, 2013 | 138 | 2013 |
| More grist for the mill? Species delimitation in the genomic era and its implications for conservation DWG Stanton, P Frandsen, RK Waples, R Heller, IRM Russo, ... Conservation Genetics 20, 101-113, 2019 | 116 | 2019 |
| Allele frequency‐free inference of close familial relationships from genotypes or low‐depth sequencing data RK Waples, A Albrechtsen, I Moltke Molecular ecology 28 (1), 35-48, 2019 | 100 | 2019 |
| Effective number of breeders from sibship reconstruction: empirical evaluations using hatchery steelhead MW Ackerman, BK Hand, RK Waples, G Luikart, RS Waples, CA Steele, ... Evolutionary applications 10 (2), 146-160, 2017 | 90 | 2017 |
| Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta) RK Waples, LW Seeb, JE Seeb Molecular Ecology Resources 16 (1), 17-28, 2016 | 71 | 2016 |
| High genetic diversity and low differentiation reflect the ecological versatility of the African leopard P Pečnerová, G Garcia-Erill, X Liu, C Nursyifa, RK Waples, CG Santander, ... Current Biology 31 (9), 1862-1871. e5, 2021 | 64 | 2021 |
| An integrated linkage map reveals candidate genes underlying adaptive variation in Chinook salmon (Oncorhynchus tshawytscha) GJ McKinney, LW Seeb, WA Larson, D Gomez‐Uchida, MT Limborg, ... Molecular ecology resources 16 (3), 769-783, 2016 | 63 | 2016 |
| Inbreeding effective population size and parentage analysis without parents RS Waples, RK Waples Molecular Ecology Resources 11, 162-171, 2011 | 61 | 2011 |
| Temporally isolated lineages of pink salmon reveal unique signatures of selection on distinct pools of standing genetic variation MT Limborg, RK Waples, JE Seeb, LW Seeb Journal of Heredity 105 (6), 835-845, 2014 | 40 | 2014 |
| Fast, accurate local ancestry inference with FLARE SR Browning, RK Waples, BL Browning The American Journal of Human Genetics 110 (2), 326-335, 2023 | 39 | 2023 |
| Pseudoreplication in genomic‐scale data sets RS Waples, RK Waples, EJ Ward Molecular Ecology Resources 22 (2), 503-518, 2022 | 37 | 2022 |
| Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits A Gilly, D Suveges, K Kuchenbaecker, M Pollard, L Southam, ... Nature communications 9 (1), 4674, 2018 | 37 | 2018 |
| Resolving allele dosage in duplicated loci using genotyping‐by‐sequencing data: A path forward for population genetic analysis GJ McKinney, RK Waples, CE Pascal, LW Seeb, JE Seeb Molecular Ecology Resources 18 (3), 570-579, 2018 | 36 | 2018 |
| Parallel signatures of selection in temporally isolated lineages of pink salmon LW Seeb, RK Waples, MT Limborg, KI Warheit, CE Pascal, JE Seeb Molecular Ecology 23 (10), 2473-2485, 2014 | 33 | 2014 |
| The application of genomics to inform conservation of a functionally important reef fish (Scarus niger) in the Philippines BL Stockwell, WA Larson, RK Waples, RA Abesamis, LW Seeb, ... Conservation Genetics 17, 239-249, 2016 | 31 | 2016 |
| Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ME Lauterbur, MIA Cavassim, AL Gladstein, G Gower, NS Pope, ... Elife 12, RP84874, 2023 | 29 | 2023 |
| Linkage mapping reveals strong chiasma interference in sockeye salmon: implications for interpreting genomic data MT Limborg, RK Waples, FW Allendorf, JE Seeb G3: Genes, Genomes, Genetics 5 (11), 2463-2473, 2015 | 29 | 2015 |
