| AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences M Varadi, D Bertoni, P Magana, U Paramval, I Pidruchna, ... Nucleic acids research 52 (D1), D368-D375, 2024 | 532 | 2024 |
| The CCP4 suite: integrative software for macromolecular crystallography J Agirre, M Atanasova, H Bagdonas, CB Ballard, A Baslé, ... Biological Crystallography 79 (6), 449-461, 2023 | 409 | 2023 |
| Overview of refinement procedures within REFMAC5: utilizing data from different sources O Kovalevskiy, RA Nicholls, F Long, A Carlon, GN Murshudov Biological Crystallography 74 (3), 215-227, 2018 | 250 | 2018 |
| Current approaches for the fitting and refinement of atomic models into cryo-EM maps using CCP-EM RA Nicholls, M Tykac, O Kovalevskiy, GN Murshudov Biological Crystallography 74 (6), 492-505, 2018 | 101 | 2018 |
| Structural basis for the nuclease activity of a bacteriophage large terminase C Smits, M Chechik, OV Kovalevskiy, MB Shevtsov, AW Foster, JC Alonso, ... EMBO reports 10 (6), 592-598, 2009 | 76 | 2009 |
| Automated refinement of macromolecular structures at low resolution using prior information O Kovalevskiy, RA Nicholls, GN Murshudov Biological Crystallography 72 (10), 1149-1161, 2016 | 73 | 2016 |
| Papillomavirus E1 helicase assembly maintains an asymmetric state in the absence of DNA and nucleotide cofactors CM Sanders, OV Kovalevskiy, D Sizov, AA Lebedev, MN Isupov, ... Nucleic acids research 35 (19), 6451-6457, 2007 | 53 | 2007 |
| CCP4 Cloud for structure determination and project management in macromolecular crystallography E Krissinel, AA Lebedev, V Uski, CB Ballard, RM Keegan, O Kovalevskiy, ... Biological Crystallography 78 (9), 1079-1089, 2022 | 52 | 2022 |
| Crystal structure of Bacillus cereus HlyIIR, a transcriptional regulator of the gene for pore-forming toxin hemolysin II OV Kovalevskiy, AA Lebedev, AK Surin, AS Solonin, AA Antson Journal of molecular biology 365 (3), 825-834, 2007 | 25 | 2007 |
| Two HlyIIR dimers bind to a long perfect inverted repeat in the operator of the hemolysin II gene from Bacillus cereus EA Rodikova, OV Kovalevskiy, SG Mayorov, ZI Budarina, VV Marchenkov, ... FEBS letters 581 (6), 1190-1196, 2007 | 20 | 2007 |
| lin28 proteins promote expression of 17∼ 92 family miRNAs during amphibian development F Warrander, L Faas, O Kovalevskiy, D Peters, M Coles, AA Antson, ... Developmental Dynamics 245 (1), 34-46, 2016 | 16 | 2016 |
| Human Lin28 forms a high-affinity 1: 1 complex with the 106~ 363 cluster miRNA miR-363 DT Peters, HKH Fung, VM Levdikov, T Irmscher, FC Warrander, SJ Greive, ... Biochemistry 55 (36), 5021-5027, 2016 | 15 | 2016 |
| AlphaFold two years on: Validation and impact O Kovalevskiy, J Mateos-Garcia, K Tunyasuvunakool Proceedings of the National Academy of Sciences 121 (34), e2315002121, 2024 | 11 | 2024 |
| Low resolution refinement of atomic models against crystallographic data RA Nicholls, O Kovalevskiy, GN Murshudov Protein Crystallography: Methods and Protocols, 565-593, 2017 | 10 | 2017 |
| Aptasensor-encapsulating semi-permeable proteinosomes for direct target detection in non-treated biofluids J Kim, H Yoo, S Woo, SS Oh Biosensors and Bioelectronics 251, 116062, 2024 | 4 | 2024 |
| Structural investigation of transcriptional regulator HlyIIR: influence of a disordered region on protein fold and dimerization OV Kovalevskiy, AS Solonin, AA Antson Proteins: Structure, Function, and Bioinformatics 78 (8), 1870-1877, 2010 | 4 | 2010 |
| Truncation of the disordered loop located within the C-terminal domain of the transcriptional regulator HlyIIR remodels its structure OV Kovalevskiy, AA Antson, AS Solonin Molecular Biology 43, 114-122, 2009 | 4 | 2009 |
| Helping researchers to solve their structures: automation and user guidance in CCP4 Cloud O Kovalevskiy, A Lebedev, E Krissinel Acta Crystallogr. Sect. A Found. Adv 77 (a2), C766-C766, 2021 | 2 | 2021 |
| AlphaFold Protein Structure Database and 3D-Beacons: New Data and Capabilities J Fleming, P Magaña, S Nair, M Tsenkov, D Bertoni, I Pidruchna, ... Journal of Molecular Biology, 168967, 2025 | | 2025 |
| CCP4 CLOUD FOR DISTRIBUTED CRYSTALLOGRAPHIC COMPUTATIONS E Krissinel, A Lebedev, V Uski, C Ballard, R Keegan, R Nicholls, ... ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 75, E171-E171, 2019 | | 2019 |