| Emergence of genomic diversity and recurrent mutations in SARS-CoV-2 L van Dorp, M Acman, D Richard, LP Shaw, CE Ford, L Ormond, CJ Owen, ... Infection, Genetics and Evolution 83, 104351, 2020 | 944 | 2020 |
| The global distribution and spread of the mobilized colistin resistance gene mcr-1 R Wang, L van Dorp, LP Shaw, P Bradley, Q Wang, X Wang, L Jin, ... Nature communications 9 (1), 1-9, 2018 | 629 | 2018 |
| Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw, C Rallis, F Balloux, ... Nature communications 8 (1), 14061, 2017 | 614 | 2017 |
| No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2 L van Dorp, D Richard, CCS Tan, LP Shaw, M Acman, F Balloux Nature communications 11 (1), 5986, 2020 | 381 | 2020 |
| Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ... Microbial genomics 5 (9), e000294, 2019 | 261 | 2019 |
| From theory to practice: translating whole-genome sequencing (WGS) into the clinic F Balloux, OB Brynildsrud, L van Dorp, LP Shaw, H Chen, KA Harris, ... Trends in microbiology 26 (12), 1035-1048, 2018 | 189 | 2018 |
| Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines SJ Bush, D Foster, DW Eyre, EL Clark, N De Maio, LP Shaw, N Stoesser, ... GigaScience 9 (2), giaa007, 2020 | 134 | 2020 |
| Modelling microbiome recovery after antibiotics using a stability landscape framework LP Shaw, H Bassam, CP Barnes, AS Walker, N Klein, F Balloux The ISME Journal, 2019 | 132 | 2019 |
| Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM M Acman, R Wang, L van Dorp, LP Shaw, Q Wang, N Luhmann, Y Yin, ... Nature Communications 13 (1), 1131, 2022 | 127 | 2022 |
| Oral microbiomes from hunter‐gatherers and traditional farmers reveal shifts in commensal balance and pathogen load linked to diet F Lassalle, M Spagnoletti, M Fumagalli, L Shaw, M Dyble, C Walker, ... Molecular ecology 27 (1), 182-195, 2018 | 124 | 2018 |
| The Human Salivary Microbiome Is Shaped by Shared Environment Rather than Genetics: Evidence from a Large Family of Closely Related Individuals L Shaw, ALR Ribeiro, AP Levine, N Pontikos, F Balloux, AW Segal, ... MBio 8 (5), e01237-17, 2017 | 116 | 2017 |
| Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study RM Doyle, DM O'sullivan, SD Aller, S Bruchmann, T Clark, ... Microbial genomics 6 (2), e000335, 2020 | 111 | 2020 |
| The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples HS Gweon, LP Shaw, J Swann, N De Maio, M AbuOun, R Niehus, ... Environmental Microbiome 14 (1), 1-15, 2019 | 101 | 2019 |
| The phylogenetic range of bacterial and viral pathogens of vertebrates LP Shaw, AD Wang, D Dylus, M Meier, G Pogacnik, C Dessimoz, ... Molecular ecology 29 (17), 3361-3379, 2020 | 98 | 2020 |
| Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture C Nimmo, LP Shaw, R Doyle, R Williams, K Brien, C Burgess, J Breuer, ... BMC genomics 20, 1-9, 2019 | 93 | 2019 |
| Niche and local geography shape the pangenome of wastewater-and livestock-associated Enterobacteriaceae LP Shaw, KK Chau, J Kavanagh, M AbuOun, E Stubberfield, HS Gweon, ... Science Advances 7 (15), eabe3868, 2021 | 73 | 2021 |
| DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization. JS Schreck, TE Ouldridge, F Romano, P Šulc, LP Shaw, AA Louis, ... Nucleic acids research, 2015 | 71 | 2015 |
| Distinguishing the Signals of Gingivitis and Periodontitis in Supragingival Plaque: A Cross-Sectional Cohort Study in Malawi L Shaw, U Harjunmaa, R Doyle, S Mulewa, D Charlie, K Maleta, R Callard, ... Applied and Environmental Microbiology 82 (18), 2016 | 63 | 2016 |
| STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies T Bharucha, C Oeser, F Balloux, JR Brown, EC Carbo, A Charlett, ... The Lancet Infectious Diseases 20 (10), e251-e260, 2020 | 59 | 2020 |
| Gut to lung translocation and antibiotic mediated selection shape the dynamics of Pseudomonas aeruginosa in an ICU patient RM Wheatley, JD Caballero, TE van der Schalk, FHR De Winter, LP Shaw, ... Nature communications 13 (1), 6523, 2022 | 53 | 2022 |