Molecular modeling and simulation: an interdisciplinary guide T Schlick Springer, 2010 | 2032 | 2010 |
Cohesin loss eliminates all loop domains SSP Rao, SC Huang, BG St Hilaire, JM Engreitz, EM Perez, ... Cell 171 (2), 305-320. e24, 2017 | 1826 | 2017 |
Lecture notes in computational science and engineering TJ Barth, M Griebel, DE Keyes, RM Nieminen, D Roose, T Schlick Springer 49, 125, 2005 | 910 | 2005 |
Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions SA Grigoryev, G Arya, S Correll, CL Woodcock, T Schlick Proceedings of the National Academy of Sciences 106 (32), 13317-13322, 2009 | 320 | 2009 |
Optimized particle-mesh Ewald/multiple-time step integration for molecular dynamics simulations PF Batcho, DA Case, T Schlick The Journal of Chemical Physics 115 (9), 4003-4018, 2001 | 269 | 2001 |
Algorithmic challenges in computational molecular biophysics T Schlick, RD Skeel, AT Brunger, LV Kalé, JA Board Jr, J Hermans, ... Journal of Computational Physics 151 (1), 9-48, 1999 | 267 | 1999 |
Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design HH Gan, S Pasquali, T Schlick Nucleic acids research 31 (11), 2926-2943, 2003 | 237 | 2003 |
Histone H1 loss drives lymphoma by disrupting 3D chromatin architecture N Yusufova, A Kloetgen, M Teater, A Osunsade, JM Camarillo, CR Chin, ... Nature 589 (7841), 299-305, 2021 | 228 | 2021 |
Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model G Arya, T Schlick Proceedings of the National Academy of Sciences 103 (44), 16236-16241, 2006 | 223 | 2006 |
Modeling superhelical DNA: recent analytical and dynamic approaches T Schlick Current opinion in structural biology 5 (2), 245-262, 1995 | 214 | 1995 |
Critical role of magnesium ions in DNA polymerase β's closing and active site assembly L Yang, K Arora, WA Beard, SH Wilson, T Schlick Journal of the american chemical society 126 (27), 8441-8453, 2004 | 203 | 2004 |
A family of symplectic integrators: stability, accuracy, and molecular dynamics applications RD Skeel, G Zhang, T Schlick SIAM Journal on Scientific Computing 18 (1), 203-222, 1997 | 201 | 1997 |
Numerical experience with limited-memory quasi-Newton and truncated Newton methods X Zou, IM Navon, M Berger, KH Phua, T Schlick, FX Le Dimet SIAM Journal on Optimization 3 (3), 582-608, 1993 | 197 | 1993 |
A tale of tails: how histone tails mediate chromatin compaction in different salt and linker histone environments G Arya, T Schlick The journal of physical chemistry A 113 (16), 4045-4059, 2009 | 196 | 2009 |
Biomolecular modeling and simulation: a field coming of age T Schlick, R Collepardo-Guevara, LA Halvorsen, S Jung, X Xiao Quarterly reviews of biophysics 44 (2), 191-228, 2011 | 195 | 2011 |
Biomolecular dynamics at long timesteps: Bridging the timescale gap between simulation and experimentation T Schlick, E Barth, M Mandziuk Annual review of biophysics and biomolecular structure 26 (1), 181-222, 1997 | 193 | 1997 |
Computational approaches to RNA structure prediction, analysis, and design C Laing, T Schlick Current opinion in structural biology 21 (3), 306-318, 2011 | 182 | 2011 |
A combined wormlike-chain and bead model for dynamic simulations of long linear DNA H Jian, AV Vologodskii, T Schlick Journal of Computational Physics 136 (1), 168-179, 1997 | 179 | 1997 |
Supercoiled DNA energetics and dynamics by computer simulation T Schlick, WK Olson Journal of molecular biology 223 (4), 1089-1119, 1992 | 175 | 1992 |
Orchestration of cooperative events in DNA synthesis and repair mechanism unraveled by transition path sampling of DNA polymerase β's closing R Radhakrishnan, T Schlick Proceedings of the National Academy of Sciences 101 (16), 5970-5975, 2004 | 173 | 2004 |