Theo dõi
Alejandra Medina-Rivera
Alejandra Medina-Rivera
Laboratorio Internacional de Investigación sobre el Genoma Humano, Universidad Nacional Autónoma de
Email được xác minh tại liigh.unam.mx - Trang chủ
Tiêu đề
Trích dẫn bởi
Trích dẫn bởi
Năm
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond
S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ...
Nucleic acids research 44 (D1), D133-D143, 2016
5592016
RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
H Salgado, M Peralta-Gil, S Gama-Castro, A Santos-Zavaleta, ...
Nucleic acids research 41 (D1), D203-D213, 2013
5202013
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)
S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ...
Nucleic acids research 39 (suppl_1), D98-D105, 2010
4692010
RSAT 2011: regulatory sequence analysis tools
M Thomas-Chollier, M Defrance, A Medina-Rivera, O Sand, C Herrmann, ...
Nucleic acids research 39 (suppl_2), W86-W91, 2011
2972011
RSAT 2015: regulatory sequence analysis tools
A Medina-Rivera, M Defrance, O Sand, C Herrmann, ...
Nucleic acids research 43 (W1), W50-W56, 2015
2882015
Genome-wide characterization of mammalian promoters with distal enhancer functions
LTM Dao, AO Galindo-Albarrán, JA Castro-Mondragon, C Andrieu-Soler, ...
Nature genetics 49 (7), 1073-1081, 2017
2822017
Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders
L Uusküla-Reimand, H Hou, P Samavarchi-Tehrani, MV Rudan, M Liang, ...
Genome biology 17, 1-22, 2016
2652016
RSAT 2018: regulatory sequence analysis tools 20th anniversary
NTT Nguyen, B Contreras-Moreira, JA Castro-Mondragon, ...
Nucleic acids research 46 (W1), W209-W214, 2018
2122018
Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways
B Ballester, A Medina-Rivera, D Schmidt, M Gonzàlez-Porta, M Carlucci, ...
Elife 3, e02626, 2014
1202014
Dynamic regulation of VEGF-inducible genes by an ERK/ERG/p300 transcriptional network
JE Fish, M Cantu Gutierrez, LT Dang, N Khyzha, Z Chen, S Veitch, ...
Development 144 (13), 2428-2444, 2017
1062017
MACE: model based analysis of ChIP-exo
L Wang, J Chen, C Wang, L Uusküla-Reimand, K Chen, A Medina-Rivera, ...
Nucleic acids research 42 (20), e156-e156, 2014
872014
Theoretical and empirical quality assessment of transcription factor-binding motifs
A Medina-Rivera, C Abreu-Goodger, M Thomas-Chollier, H Salgado, ...
Nucleic acids research 39 (3), 808-824, 2011
792011
Widespread enhancer activity from core promoters
A Medina-Rivera, D Santiago-Algarra, D Puthier, S Spicuglia
Trends in biochemical sciences 43 (6), 452-468, 2018
662018
RSAT 2022: regulatory sequence analysis tools
W Santana-Garcia, JA Castro-Mondragon, M Padilla-Gálvez, NTT Nguyen, ...
Nucleic Acids Research 50 (W1), W670-W676, 2022
622022
In Silico Identification and Experimental Characterization of Regulatory Elements Controlling the Expression of the Salmonella csrB and csrC Genes
LC Martínez, I Martínez-Flores, H Salgado, M Fernández-Mora, ...
Journal of Bacteriology 196 (2), 325-336, 2014
432014
Bioinformatics resources for the study of gene regulation in bacteria
J Collado-Vides, H Salgado, E Morett, S Gama-Castro, V Jiménez-Jacinto, ...
Journal of bacteriology 191 (1), 23-31, 2009
412009
RegulonDB version 7.0: transcriptional regulation of
S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ...
Escherichia coli, 98-105, 0
38
Epromoters function as a hub to recruit key transcription factors required for the inflammatory response
D Santiago-Algarra, C Souaid, H Singh, LTM Dao, S Hussain, ...
Nature communications 12 (1), 6660, 2021
322021
Conserved regulatory logic at accessible and inaccessible chromatin during the acute inflammatory response in mammals
A Alizada, N Khyzha, L Wang, L Antounians, X Chen, M Khor, M Liang, ...
Nature Communications 12 (1), 567, 2021
262021
Evidence classification of high-throughput protocols and confidence integration in RegulonDB
V Weiss, A Medina-Rivera, AM Huerta, A Santos-Zavaleta, H Salgado, ...
Database 2013, 2013
252013
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