| Quantifying the determinants of evolutionary dynamics leading to drug resistance G Chevereau, M Dravecká, T Batur, A Guvenek, DH Ayhan, E Toprak, ... PLoS biology 13 (11), e1002299, 2015 | 121 | 2015 |
| Sequence-specific targeting of bacterial resistance genes increases antibiotic efficacy DH Ayhan, YT Tamer, M Akbar, SM Bailey, M Wong, SM Daly, ... PLoS biology 14 (9), e1002552, 2016 | 95 | 2016 |
| The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes Y Zhang, H Yang, D Turra, S Zhou, DH Ayhan, GA DeIulio, L Guo, K Broz, ... Communications biology 3 (1), 50, 2020 | 85 | 2020 |
| Improved assembly of reference genome Fusarium oxysporum f. sp. lycopersici strain Fol4287 DH Ayhan, C López-Díaz, A Di Pietro, LJ Ma Microbiology Resource Announcements 7 (10), 10.1128/mra. 00910-18, 2018 | 38 | 2018 |
| Two telomere-to-telomere gapless genomes reveal insights into Capsicum evolution and capsaicinoid biosynthesis W Chen, X Wang, J Sun, X Wang, Z Zhu, DH Ayhan, S Yi, M Yan, L Zhang, ... Nature Communications 15 (1), 4295, 2024 | 17 | 2024 |
| The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineagespecific chromosomes. Commun Biol 3: 1–12 Y Zhang, H Yang, D Turra, S Zhou, DH Ayhan, GA DeIulio, L Guo, K Broz, ... | 15 | 2020 |
| TEfinder: A bioinformatics pipeline for detecting new transposable element insertion events in next-generation sequencing data V Sohrab, C López-Díaz, A Di Pietro, LJ Ma, DH Ayhan Genes 12 (2), 224, 2021 | 11 | 2021 |
| Accessory Chromosomes of the Fusarium oxysporum Species Complex and Their Contribution to Host Niche Adaptation H Yu, DH Ayhan, D Martínez-Soto, SM Cochavi, LJ Ma Plant Relationships: Fungal-Plant Interactions, 371-388, 2022 | 10 | 2022 |
| High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm S Khoulassa, B Elmoualij, M Benlyas, R Meziani, EDT Bouhlali, B Houria, ... Plant Disease 106 (7), 1974-1976, 2022 | 9 | 2022 |
| Genome Sequence of Fusarium oxysporum f. sp. matthiolae, a Brassicaceae Pathogen H Yu, DH Ayhan, AC Diener, LJ Ma Molecular Plant-Microbe Interactions 33 (4), 569-572, 2020 | 8 | 2020 |
| Improved assembly of reference genome Fusarium oxysporum f. sp. lycopersici strain Fol4287. Microbiol Resour Announc 7: e00910-18 DH Ayhan, C López-Díaz, A Di Pietro, LJ Ma | 7 | 2018 |
| A synthetic knob for modulating antibiotic resistance DH Ayhan, YT Tamer, M Akbar, DE Greenberg, E Toprak Biophysical Journal 110 (3), 477a, 2016 | 3 | 2016 |
| Super pangenome of grapevines empowers improvement of the oldest domesticated fruit L Guo, X Wang, DH Ayhan, MS Rhaman, M Yan, J Jiang, D Wang, ... bioRxiv, 2024.02. 28.582440, 2024 | 1 | 2024 |
| FoPGDB: a pangenome database of Fusarium oxysporum, a cross-kingdom fungal pathogen T Meng, H Jiao, Y Zhang, Y Zhou, S Chen, X Wang, B Yang, J Sun, ... Database 2024, baae017, 2024 | 1 | 2024 |
| Genome Sequence Resource of Fusarium graminearum TaB10 and Fusarium avenaceum KA13, Causal Agents of Stored Apple Rot M Petreš, J Hrustić, N Vučinić, LJ Ma, DH Ayhan, M Grahovac Molecular Plant-Microbe Interactions 36 (1), 64-67, 2023 | 1 | 2023 |
| Super pangenome of Vitis empowers identification of downy mildew resistance genes for grapevine improvement L Guo, X Wang, DH Ayhan, MS Rhaman, M Yan, J Jiang, D Wang, ... Nature Genetics, 1-13, 2025 | | 2025 |
| Transposons and accessory genes drive adaptation in a clonally evolving fungal pathogen C López Díaz, DH Ayhan, A Rodríguez López, L Gómez Gil, LJ Ma, ... bioRxiv, 2025.02. 18.635021, 2025 | | 2025 |
| A gap-free genome assembly of Fusarium oxysporum f. sp. conglutinans, a vascular wilt pathogen H Wang, G Yao, W Chen, DH Ayhan, X Wang, J Sun, S Yi, T Meng, ... Scientific Data 11 (1), 925, 2024 | | 2024 |
| The differential virulence of Fusarium strains causing corneal infections and plant diseases is associated with accessory chromosome composition DH Ayhan, S Abbondante, D Martínez-Soto, S Milo, K Rickelton, V Sohrab, ... bioRxiv, 2024 | | 2024 |
| Two telomere-to-telomere gapless genomes reveal insights into Capsicum evolution and capsaicinoid biosynthesis L Guo, W Chen, X Wang, J Sun, X Wang, Z Zhu, DH Ayhan, S Yi, M Yan, ... | | 2024 |
