| METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks Z Zhou, PQ Tran, AM Breister, Y Liu, K Kieft, ES Cowley, U Karaoz, ... Microbiome 10 (1), 33, 2022 | 391* | 2022 |
| Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation Z Zhou, PQ Tran, K Kieft, K Anantharaman The ISME Journal, 2020 | 187 | 2020 |
| Genomic evidence for the degradation of terrestrial organic matter by pelagic Arctic Ocean Chloroflexi bacteria D Colatriano, PQ Tran, C Guéguen, WJ Williams, C Lovejoy, DA Walsh Communications biology 1 (1), 90, 2018 | 114 | 2018 |
| Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika PQ Tran, SC Bachand, PB McIntyre, BM Kraemer, Y Vadeboncoeur, ... The ISME Journal 15 (7), 1971-1986, 2021 | 111 | 2021 |
| Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes P Tran, A Ramachandran, O Khawasik, BE Beisner, M Rautio, Y Huot, ... Environmental microbiology 20 (7), 2568-2584, 2018 | 78 | 2018 |
| Expanded phylogenetic diversity and metabolic flexibility of mercury-methylating microorganisms EA McDaniel, BD Peterson, SLR Stevens, PQ Tran, K Anantharaman, ... MSystems 5 (4), 10.1128/msystems. 00299-20, 2020 | 71* | 2020 |
| Mercury methylation genes identified across diverse anaerobic microbial guilds in a eutrophic sulfate-enriched lake BD Peterson, EA McDaniel, AG Schmidt, RF Lepak, SE Janssen, PQ Tran, ... Environmental Science & Technology 54 (24), 15840-15851, 2020 | 70 | 2020 |
| Sulfur cycling connects microbiomes and biogeochemistry in deep-sea hydrothermal plumes Z Zhou, PQ Tran, AM Adams, K Kieft, JA Breier, CS Fortunato, CS Sheik, ... The ISME Journal 17 (8), 1194-1207, 2023 | 24 | 2023 |
| Biogeochemistry goes viral: towards a multifaceted approach to study viruses and biogeochemical cycling PQ Tran, K Anantharaman Msystems 6 (5), 10.1128/msystems. 01138-21, 2021 | 22 | 2021 |
| Environmental predictors of electroactive bacterioplankton in small boreal lakes CN Olmsted, R Ort, PQ Tran, EA McDaniel, EE Roden, DR Bond, S He, ... Environmental microbiology 25 (3), 705-720, 2023 | 9 | 2023 |
| Viromes vs. mixed community metagenomes: choice of method dictates interpretation of viral community ecology JC Kosmopoulos, KM Klier, MV Langwig, PQ Tran, K Anantharaman Microbiome 12 (1), 195, 2024 | 8 | 2024 |
| Physiological and genomic evidence of cysteine degradation and aerobic hydrogen sulfide production in freshwater bacteria PQ Tran, SC Bachand, JC Hotvedt, K Kieft, EA McDaniel, KD McMahon, ... Msystems 8 (3), e00201-23, 2023 | 7* | 2023 |
| The AEMON-J “Hacking Limnology” workshop series & virtual summit: Incorporating data science and open science in aquatic research MF Meyer, R Ladwig, JP Mesman, IA Oleksy, CC Barbosa, KM Cawley, ... Limnology and Oceanography Bulletin 30 (4), 140-143, 2021 | 5 | 2021 |
| Diversity and ecology of microbial sulfur metabolism Z Zhou, PQ Tran, ES Cowley, E Trembath-Reichert, K Anantharaman Nature Reviews Microbiology 23 (2), 122-140, 2025 | 4 | 2025 |
| Diversity, distribution, and expression of opsin genes in freshwater lake S He, AM Linz, SLR Stevens, PQ Tran, F Moya-Flores, BO Oyserman, ... Molecular Ecology, 01-20, 2023 | 4 | 2023 |
| Hacking limnology workshop and DSOS22: Creating a community of practice for the nexus of data science, open science, and the aquatic sciences MF Meyer, CC Barbosa, R Ladwig, JP Mesman, NS Börekçi, K Cawley, ... Limnology and Oceanography Bulletin 31 (4), 2022 | 4 | 2022 |
| zol and fai: large-scale targeted detection and evolutionary investigation of gene clusters R Salamzade, PQ Tran, C Martin, AL Manson, MS Gilmore, AM Earl, ... Nucleic Acids Research 53 (3), gkaf045, 2025 | 2 | 2025 |
| A 20-year time-series of a freshwater lake reveals seasonal dynamics and environmental drivers of viral diversity, ecology, and evolution Z Zhou, PQ Tran, C Martin, RR Rohwer, BJ Baker, KD McMahon, ... bioRxiv, 2024.02. 06.579183, 2024 | 2 | 2024 |
| Viral impacts on microbial activity and biogeochemical cycling in a seasonally anoxic freshwater lake PQ Tran, SC Bachand, B Peterson, S He, K McMahon, K Anantharaman bioRxiv, 2023.04. 19.537559, 2023 | 2 | 2023 |
| DNA sequencing approach influences virus identification across different environments JC Kosmopoulos, KM Klier, MV Langwig, PQ Tran, K Anantharaman | | 2025 |