| Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ... Nucleic acids research 45 (D1), D535-D542, 2017 | 1639 | 2017 |
| PATRIC, the bacterial bioinformatics database and analysis resource AR Wattam, D Abraham, O Dalay, TL Disz, T Driscoll, JL Gabbard, ... Nucleic acids research 42 (D1), D581-D591, 2014 | 1388 | 2014 |
| The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ... Nucleic acids research 48 (D1), D606-D612, 2020 | 945 | 2020 |
| Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR RD Olson, R Assaf, T Brettin, N Conrad, C Cucinell, JJ Davis, ... Nucleic acids research 51 (D1), D678-D689, 2023 | 606 | 2023 |
| PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species JJ Gillespie, AR Wattam, SA Cammer, JL Gabbard, MP Shukla, O Dalay, ... Infection and immunity 79 (11), 4286-4298, 2011 | 381 | 2011 |
| Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma CS Ross-Innes, J Becq, A Warren, RK Cheetham, H Northen, ... Nature genetics 47 (9), 1038-1046, 2015 | 325 | 2015 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 274 | 2022 |
| A Draft Genome Sequence of Pseudomonas syringae pv. tomato T1 Reveals a Type III Effector Repertoire Significantly Divergent from That of Pseudomonas syringae pv … NF Almeida, S Yan, M Lindeberg, DJ Studholme, DJ Schneider, ... Molecular plant-microbe interactions 22 (1), 52-62, 2009 | 157 | 2009 |
| PATRIC as a unique resource for studying antimicrobial resistance DA Antonopoulos, R Assaf, RK Aziz, T Brettin, C Bun, N Conrad, JJ Davis, ... Briefings in bioinformatics 20 (4), 1094-1102, 2019 | 120 | 2019 |
| Missing genes in the annotation of prokaryotic genomes AS Warren, J Archuleta, W Feng, JC Setubal BMC bioinformatics 11, 1-12, 2010 | 113 | 2010 |
| Assembly, annotation, and comparative genomics in PATRIC, the all bacterial bioinformatics resource center AR Wattam, T Brettin, JJ Davis, S Gerdes, R Kenyon, D Machi, C Mao, ... Comparative genomics: Methods and protocols, 79-101, 2018 | 100 | 2018 |
| Database resources for the tuberculosis community JM Lew, C Mao, M Shukla, A Warren, R Will, D Kuznetsov, I Xenarios, ... Tuberculosis 93 (1), 12-17, 2013 | 41 | 2013 |
| Evaluating the impact of international airline suspensions on the early global spread of COVID-19 A Adiga, S Venkatramanan, J Schlitt, A Peddireddy, A Dickerman, A Bura, ... Medrxiv, 2020 | 39 | 2020 |
| A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes M VanOeffelen, M Nguyen, D Aytan-Aktug, T Brettin, EM Dietrich, ... Briefings in Bioinformatics 22 (6), bbab313, 2021 | 28 | 2021 |
| Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support P Bhattacharya, J Chen, S Hoops, D Machi, B Lewis, S Venkatramanan, ... The International Journal of High Performance Computing Applications 37 (1 …, 2023 | 25 | 2023 |
| Functional bias in molecular evolution rate of Arabidopsis thaliana AS Warren, R Anandakrishnan, L Zhang BMC Evolutionary Biology 10, 1-10, 2010 | 23 | 2010 |
| Enthalpy–entropy compensation in the transition of a monospecific antibody towards antigen-binding promiscuity J Kang, AS Warren Molecular immunology 44 (14), 3623-3624, 2007 | 18 | 2007 |
| Efficient algorithms for generating provably near-optimal cluster descriptors for explainability P Sambaturu, A Gupta, I Davidson, SS Ravi, A Vullikanti, A Warren Proceedings of the AAAI Conference on Artificial Intelligence 34 (02), 1636-1643, 2020 | 17 | 2020 |
| Whole exome sequencing to identify genetic variants associated with raised atherosclerotic lesions in young persons JE Hixson, G Jun, LC Shimmin, Y Wang, G Yu, C Mao, AS Warren, ... Scientific reports 7 (1), 4091, 2017 | 17 | 2017 |
| The Genome Reverse Compiler: an explorative annotation tool AS Warren, JC Setubal BMC bioinformatics 10, 1-17, 2009 | 17 | 2009 |
