| Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB TZ DeSantis, P Hugenholtz, N Larsen, M Rojas, EL Brodie, K Keller, ... Applied and environmental microbiology 72 (7), 5069-5072, 2006 | 12058 | 2006 |
| Induction of intestinal Th17 cells by segmented filamentous bacteria II Ivanov, K Atarashi, N Manel, EL Brodie, T Shima, U Karaoz, D Wei, ... Cell 139 (3), 485-498, 2009 | 5158 | 2009 |
| Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly K Zhalnina, KB Louie, Z Hao, N Mansoori, UN Da Rocha, S Shi, H Cho, ... Nature microbiology 3 (4), 470-480, 2018 | 1670 | 2018 |
| NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes TZ DeSantis, P Hugenholtz, K Keller, EL Brodie, N Larsen, YM Piceno, ... Nucleic acids research 34 (suppl_2), W394-W399, 2006 | 1211 | 2006 |
| Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system K Anantharaman, CT Brown, LA Hug, I Sharon, CJ Castelle, AJ Probst, ... Nature communications 7 (1), 13219, 2016 | 1069 | 2016 |
| Urban aerosols harbor diverse and dynamic bacterial populations EL Brodie, TZ DeSantis, JPM Parker, IX Zubietta, YM Piceno, ... Proceedings of the National Academy of Sciences 104 (1), 299-304, 2007 | 836 | 2007 |
| Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma YJ Huang, CE Nelson, EL Brodie, TZ DeSantis, MS Baek, J Liu, T Woyke, ... Journal of Allergy and Clinical Immunology 127 (2), 372-381. e3, 2011 | 814 | 2011 |
| Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change AA Malik, JBH Martiny, EL Brodie, AC Martiny, KK Treseder, SD Allison The ISME journal 14 (1), 1-9, 2020 | 706 | 2020 |
| Life and death in the soil microbiome: how ecological processes influence biogeochemistry NW Sokol, E Slessarev, GL Marschmann, A Nicolas, SJ Blazewicz, ... Nature Reviews Microbiology 20 (7), 415-430, 2022 | 657 | 2022 |
| Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance KC Goldfarb, U Karaoz, CA Hanson, CA Santee, MA Bradford, ... Frontiers in microbiology 2, 94, 2011 | 629 | 2011 |
| High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment TZ DeSantis, EL Brodie, JP Moberg, IX Zubieta, YM Piceno, GL Andersen Microbial ecology 53, 371-383, 2007 | 603 | 2007 |
| Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation EL Brodie, TZ DeSantis, DC Joyner, SM Baek, JT Larsen, GL Andersen, ... Applied and environmental microbiology 72 (9), 6288-6298, 2006 | 556 | 2006 |
| Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens R Srinivasan, U Karaoz, M Volegova, J MacKichan, M Kato-Maeda, ... PloS one 10 (2), e0117617, 2015 | 551 | 2015 |
| Environmental genomics reveals a single-species ecosystem deep within Earth D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ... Science 322 (5899), 275-278, 2008 | 545 | 2008 |
| Design of 16S rRNA gene primers for 454 pyrosequencing of the human foregut microbiome CW Nossa, WE Oberdorf, L Yang, JA Aas, BJ Paster, TZ DeSantis, ... World journal of gastroenterology: WJG 16 (33), 4135, 2010 | 527 | 2010 |
| Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients MJ Cox, M Allgaier, B Taylor, MS Baek, YJ Huang, RA Daly, U Karaoz, ... PloS one 5 (6), e11044, 2010 | 518 | 2010 |
| Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups SA Placella, EL Brodie, MK Firestone Proceedings of the National Academy of Sciences 109 (27), 10931-10936, 2012 | 488 | 2012 |
| Gut microbiota mediate caffeine detoxification in the primary insect pest of coffee JA Ceja-Navarro, FE Vega, U Karaoz, Z Hao, S Jenkins, HC Lim, ... Nature communications 6 (1), 7618, 2015 | 479 | 2015 |
| Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata S Sunagawa, TZ DeSantis, YM Piceno, EL Brodie, MK DeSalvo, ... The ISME journal 3 (5), 512-521, 2009 | 449 | 2009 |
| Long-term sustainability of a high-energy, low-diversity crustal biome LH Lin, PL Wang, D Rumble, J Lippmann-Pipke, E Boice, LM Pratt, ... Science 314 (5798), 479-482, 2006 | 447 | 2006 |
