| A leafhopper-transmissible DNA virus with novel evolutionary lineage in the family geminiviridae implicated in grapevine redleaf disease by next-generation sequencing S Poojari, OJ Alabi, VY Fofanov, RA Naidu PloS one 8 (6), e64194, 2013 | 154 | 2013 |
| Metagenomic analysis of the airborne environment in urban spaces NA Be, JB Thissen, VY Fofanov, JE Allen, M Rojas, G Golovko, Y Fofanov, ... Microbial Ecology 69, 346-355, 2015 | 116 | 2015 |
| How independent are the appearances of n-mers in different genomes? Y Fofanov, Y Luo, C Katili, J Wang, Y Belosludtsev, T Powdrill, ... Bioinformatics 20 (15), 2421-2428, 2004 | 112 | 2004 |
| Beijing sublineages of Mycobacterium tuberculosis differ in pathogenicity in the guinea pig M Kato-Maeda, CA Shanley, D Ackart, LG Jarlsberg, S Shang, ... Clinical and vaccine immunology 19 (8), 1227-1237, 2012 | 109 | 2012 |
| Overexpression and mislocalization of the chromosomal segregation protein separase in multiple human cancers R Meyer, V Fofanov, AK Panigrahi, F Merchant, N Zhang, D Pati Clinical Cancer Research 15 (8), 2703-2710, 2009 | 97 | 2009 |
| Prediction of enzyme function based on 3D templates of evolutionarily important amino acids DM Kristensen, RM Ward, AM Lisewski, S Erdin, BY Chen, VY Fofanov, ... BMC bioinformatics 9, 1-19, 2008 | 91 | 2008 |
| A Bacillus anthracis genome sequence from the Sverdlovsk 1979 autopsy specimens JW Sahl, T Pearson, R Okinaka, JM Schupp, JD Gillece, H Heaton, ... MBio 7 (5), 10.1128/mbio. 01501-16, 2016 | 81 | 2016 |
| A survey of health disparities, social determinants of health, and converging morbidities in a county jail: A cultural-ecological assessment of health conditions in jail … RT Trotter, MR Lininger, R Camplain, VY Fofanov, C Camplain, ... International journal of environmental research and public health 15 (11), 2500, 2018 | 54 | 2018 |
| PIQA: pipeline for Illumina G1 genome analyzer data quality assessment A Martínez-Alcántara, E Ballesteros, C Feng, M Rojas, H Koshinsky, ... Bioinformatics 25 (18), 2438-2439, 2009 | 53 | 2009 |
| The MASH pipeline for protein function prediction and an algorithm for the geometric refinement of 3D motifs BY Chen, VY Fofanov, DH Bryant, BD Dodson, DM Kristensen, ... Journal of Computational Biology 14 (6), 791-816, 2007 | 51 | 2007 |
| Algorithms for structural comparison and statistical analysis of 3D protein motifs BY Chen, VY Fofanov, DM Kristensen, M Kimmel, O Lichtarge, LE Kavraki Biocomputing 2005, 334-345, 2005 | 47 | 2005 |
| Separase loss of function cooperates with the loss of p53 in the initiation and progression of T-and B-cell lymphoma, leukemia and aneuploidy in mice M Mukherjee, G Ge, N Zhang, E Huang, LV Nakamura, M Minor, ... PLoS One 6 (7), e22167, 2011 | 44 | 2011 |
| Genomic Epidemiology of Multidrug-Resistant Mycobacterium tuberculosis During Transcontinental Spread M Coscolla, PM Barry, JE Oeltmann, H Koshinsky, T Shaw, M Cilnis, ... The Journal of infectious diseases 212 (2), 302-310, 2015 | 42 | 2015 |
| Application of next generation sequencing technologies to the identification of highly degraded unknown soldiers’ remains O Loreille, H Koshinsky, VY Fofanov, JA Irwin Forensic Science International: Genetics Supplement Series 3 (1), e540-e541, 2011 | 39 | 2011 |
| Recurrent use of evolutionary importance for functional annotation of proteins based on local structural similarity DM Kristensen, BY Chen, VY Fofanov, RM Ward, AM Lisewski, M Kimmel, ... Protein Science 15 (6), 1530-1536, 2006 | 37 | 2006 |
| Detection of Bacillus anthracis DNA in Complex Soil and Air Samples Using Next-Generation Sequencing NA Be, JB Thissen, SN Gardner, KS McLoughlin, VY Fofanov, ... PLoS One 8 (9), e73455, 2013 | 33 | 2013 |
| Epidemiology of incarceration: characterizing jail incarceration for public health research R Camplain, M Warren, JA Baldwin, C Camplain, VY Fofanov, RT Trotter Epidemiology 30 (4), 561-568, 2019 | 32 | 2019 |
| A fecal sequel: Testing the limits of a genetic assay for bat species identification FM Walker, A Tobin, NB Simmons, CJ Sobek, DE Sanchez, CL Chambers, ... Plos one 14 (11), e0224969, 2019 | 31 | 2019 |
| Rapid response of nitrogen cycling gene transcription to labile carbon amendments in a soil microbial community PF Chuckran, V Fofanov, BA Hungate, EM Morrissey, E Schwartz, ... MSystems 6 (3), 10.1128/msystems. 00161-21, 2021 | 30 | 2021 |
| Health disparities and converging epidemics in jail populations: protocol for a mixed-methods study RT Trotter II, R Camplain, ER Eaves, VY Fofanov, NO Dmitrieva, CM Hepp, ... JMIR research protocols 7 (10), e10337, 2018 | 28 | 2018 |
