| Clinical temporal relation extraction with probabilistic soft logic regularization and global inference Y Zhou, Y Yan, R Han, JH Caufield, KW Chang, Y Sun, P Ping, W Wang Proceedings of the AAAI Conference on Artificial Intelligence 35 (16), 14647 …, 2021 | 56 | 2021 |
| MIND-S is a deep-learning prediction model for elucidating protein post-translational modifications in human diseases Y Yan, JY Jiang, M Fu, D Wang, AR Pelletier, D Sigdel, DCM Ng, W Wang, ... Cell reports methods 3 (3), 2023 | 16 | 2023 |
| Defining the distance between diseases using SNOMED CT embeddings M Fu, Y Yan, LMO Loohuis, TS Chang Journal of Biomedical Informatics 139, 104307, 2023 | 2 | 2023 |
| Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundation Models BS Sankar, D Gilliland, J Rincon, H Hermjakob, Y Yan, I Adam, ... Bioengineering 11 (10), 984, 2024 | 1 | 2024 |
| Missing Values in Longitudinal Proteome Dynamics Studies: Making a Case for Data Multiple Imputation Y Yan, BS Sankar, B Mirza, DCM Ng, AR Pelletier, SD Huang, W Wang, ... Journal of Proteome Research 23 (9), 4151-4162, 2024 | 1 | 2024 |
| Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundational Models SS Baradwaj, D Gilliland, J Rincon, H Hermjakob, Y Yan, I Adam, ... arXiv preprint arXiv:2408.01431, 2024 | 1 | 2024 |
| Explainable Biomedical Hypothesis Generation via Retrieval Augmented Generation enabled Large Language Models AR Pelletier, J Ramirez, I Adam, S Sankar, Y Yan, D Wang, D Steinecke, ... arXiv preprint arXiv:2407.12888, 2024 | 1 | 2024 |
| CliBench: Multifaceted Evaluation of Large Language Models in Clinical Decisions on Diagnoses, Procedures, Lab Tests Orders and Prescriptions MD Ma, C Ye, Y Yan, X Wang, P Ping, TS Chang, W Wang arXiv preprint arXiv:2406.09923, 2024 | 1 | 2024 |
| Protocol for the prediction, interpretation, and mutation evaluation of post-translational modification using MIND-S Y Yan, D Wang, R Xin, RA Soriano, DCM Ng, W Wang, P Ping Star Protocols 4 (4), 102682, 2023 | 1 | 2023 |
| Building an Ethical and Trustworthy Biomedical AI Ecosystem for the Translational and Clinical Integration of Foundational Models S Sankar Baradwaj, D Gilliland, J Rincon, H Hermjakob, Y Yan, I Adam, ... arXiv e-prints, arXiv: 2408.01431, 2024 | | 2024 |
| Automatic Estimation of Limbal Stem Cell Densities in Cultured Epithelial Cell Microscopy Imaging N Siu, M Ruiz, SG Garrido, Y Yan, D Steinecke, E Rao, R Choi, ... 2021 IEEE 21st International Conference on Bioinformatics and Bioengineering …, 2021 | | 2021 |
