| BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database T Brůna, KJ Hoff, A Lomsadze, M Stanke, M Borodovsky NAR genomics and bioinformatics 3 (1), lqaa108, 2021 | 1317 | 2021 |
| Butterfly genome reveals promiscuous exchange of mimicry adaptations among species KK Dasmahapatra, JR Walters, AD Briscoe, JW Davey, A Whibley, ... Nature 487, 94-98, 2012 | 1248* | 2012 |
| BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS KJ Hoff, S Lange, A Lomsadze, M Borodovsky, M Stanke Bioinformatics 32 (5), 767-769, 2016 | 1074 | 2016 |
| Whole-Genome Annotation with BRAKER KJ Hoff, A Lomsadze, M Borodovsky, M Stanke Methods in Molecular Biology 1962, 65-95, 2019 | 641 | 2019 |
| Finding the missing honey bee genes: lessons learned from a genome upgrade CG Elsik, KC Worley, AK Bennett, M Beye, F Camara, CP Childers, ... BMC genomics 15, 1-29, 2014 | 445 | 2014 |
| The genomes of two key bumblebee species with primitive eusocial organization BM Sadd, SM Barribeau, G Bloch, DC De Graaf, P Dearden, CG Elsik, ... Genome biology 16, 1-32, 2015 | 410 | 2015 |
| WebAUGUSTUS—a web service for training AUGUSTUS and predicting genes in eukaryotes KJ Hoff, M Stanke Nucleic acids research 41 (W1), W123-W128, 2013 | 298 | 2013 |
| Predicting genes in single genomes with AUGUSTUS KJ Hoff, M Stanke Current protocols in bioinformatics 65 (1), e57, 2019 | 297 | 2019 |
| Orphelia: predicting genes in metagenomic sequencing reads KJ Hoff, T Lingner, P Meinicke, M Tech Nucleic acids research 37 (suppl_2), W101-W105, 2009 | 174 | 2009 |
| TSEBRA: Transcript Selector for BRAKER L Gabriel, KJ Hoff, T Bruna, M Borodovsky, M Stanke BMC Bioinformatics 22, 556, 2021 | 172 | 2021 |
| BRAKER3: Fully Automated Genome Annotation Using RNA-Seq and Protein Evidence with GeneMark-ETP, AUGUSTUS and TSEBRA L Gabriel, T Bruna, KJ Hoff, M Ebel, A Lomsadze, M Borodovsky, ... https://www.biorxiv.org/content/10.1101/2023.06.10.544449v1, 2023 | 166 | 2023 |
| Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria H Philippe, AJ Poustka, M Chiodin, KJ Hoff, C Dessimoz, B Tomiczek, ... Current Biology, 2019 | 147 | 2019 |
| Gene prediction in metagenomic fragments: a large scale machine learning approach KJ Hoff, M Tech, T Lingner, R Daniel, B Morgenstern, P Meinicke BMC bioinformatics 9, 1-14, 2008 | 140 | 2008 |
| The effect of sequencing errors on metagenomic gene prediction KJ Hoff BMC genomics 10, 1-9, 2009 | 134 | 2009 |
| Verticillium transcription activator of adhesion Vta2 suppresses microsclerotia formation and is required for systemic infection of plant roots VT Tran, SA Braus‐Stromeyer, H Kusch, M Reusche, A Kaever, A Kühn, ... New Phytologist 202 (2), 565-581, 2014 | 110 | 2014 |
| Standards recommendations for the Earth BioGenome Project MKN Lawniczak, R Durbin, P Flicek, K Lindblad-Toh, X Wei, JM Archibald, ... Proceedings of the National Academy of Sciences of the United States of …, 2022 | 76 | 2022 |
| Gene prediction: methods and protocols KJ Hoff, A Lomsadze, M Borodovsky, M Stanke, M Kollmar Springer, New York 1962, 65-95, 2019 | 61 | 2019 |
| The nervous system of Xenacoelomorpha: a genomic perspective E Perea-Atienza, B Gavilán, M Chiodin, JF Abril, KJ Hoff, AJ Poustka, ... Journal of Experimental Biology 218 (4), 618-628, 2015 | 45 | 2015 |
| Chromosome-level reference genome of the European wasp spider Argiope bruennichi: a resource for studies on range expansion and evolutionary adaptation MM Sheffer, A Hoppe, H Krehenwinkel, G Uhl, AW Kuss, L Jensen, ... GigaScience 10 (1), giaa148, 2021 | 44 | 2021 |
| Galba: genome annotation with miniprot and AUGUSTUS T Brůna, H Li, J Guhlin, D Honsel, S Herbold, M Stanke, N Nenasheva, ... BMC bioinformatics 24 (1), 327, 2023 | 32 | 2023 |
Mario StankeProfessor of Bioinformatics, University of Greifswald在 uni-greifswald.de 的电子邮件经过验证