| Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex KR Maynard, L Collado-Torres, LM Weber, C Uytingco, BK Barry, ... Nature neuroscience 24 (3), 425-436, 2021 | 731 | 2021 |
| RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic Acids Research 39 (suppl 1), D98, 2011 | 469 | 2011 |
| Reproducible RNA-seq analysis using recount2 L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ... Nature biotechnology 35 (4), 319-321, 2017 | 424 | 2017 |
| Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis AE Jaffe, RE Straub, JH Shin, R Tao, Y Gao, L Collado-Torres, ... Nature neuroscience 21 (8), 1117-1125, 2018 | 342 | 2018 |
| Regional heterogeneity in gene expression, regulation, and coherence in the frontal cortex and hippocampus across development and schizophrenia L Collado-Torres, EE Burke, A Peterson, JH Shin, RE Straub, A Rajpurohit, ... Neuron 103 (2), 203-216. e8, 2019 | 197 | 2019 |
| Developmental regulation of human cortex transcription and its clinical relevance at single base resolution AE Jaffe, J Shin, L Collado-Torres, JT Leek, R Tao, C Li, Y Gao, Y Jia, ... Nature neuroscience 18 (1), 154-161, 2015 | 193 | 2015 |
| recount3: summaries and queries for large-scale RNA-seq expression and splicing C Wilks, SC Zheng, FY Chen, R Charles, B Solomon, JP Ling, EL Imada, ... Genome biology 22, 1-40, 2021 | 180 | 2021 |
| Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain MN Tran, KR Maynard, A Spangler, LA Huuki, KD Montgomery, ... Neuron 109 (19), 3088-3103. e5, 2021 | 177 | 2021 |
| Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs EE Burke, JG Chenoweth, JH Shin, L Collado-Torres, SK Kim, N Micali, ... Nature communications 11 (1), 462, 2020 | 135 | 2020 |
| Interspecies interactions that result in Bacillus subtilis forming biofilms are mediated mainly by members of its own genus EA Shank, V Klepac-Ceraj, L Collado-Torres, GE Powers, R Losick, ... Proceedings of the National Academy of Sciences 108 (48), E1236-E1243, 2011 | 134 | 2011 |
| Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive A Nellore, AE Jaffe, JP Fortin, J Alquicira-Hernández, L Collado-Torres, ... Genome biology 17, 1-14, 2016 | 127 | 2016 |
| Altered expression of histamine signaling genes in autism spectrum disorder C Wright, JH Shin, A Rajpurohit, A Deep-Soboslay, L Collado-Torres, ... Translational psychiatry 7 (5), e1126-e1126, 2017 | 114 | 2017 |
| spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data B Pardo, A Spangler, LM Weber, SC Page, SC Hicks, AE Jaffe, ... BMC genomics 23 (1), 434, 2022 | 100 | 2022 |
| Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer’s disease SA Semick, RA Bharadwaj, L Collado-Torres, R Tao, JH Shin, ... Acta neuropathologica 137, 557-569, 2019 | 100 | 2019 |
| SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor D Righelli, LM Weber, HL Crowell, B Pardo, L Collado-Torres, ... Bioinformatics 38 (11), 3128-3131, 2022 | 96 | 2022 |
| Profiling gene expression in the human dentate gyrus granule cell layer reveals insights into schizophrenia and its genetic risk AE Jaffe, DJ Hoeppner, T Saito, L Blanpain, J Ukaigwe, EE Burke, ... Nature neuroscience 23 (4), 510-519, 2020 | 95 | 2020 |
| SynGAP isoforms differentially regulate synaptic plasticity and dendritic development Y Araki, I Hong, TR Gamache, S Ju, L Collado-Torres, JH Shin, ... Elife 9, e56273, 2020 | 90 | 2020 |
| Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods C Wright, A Rajpurohit, EE Burke, C Williams, L Collado-Torres, M Kimos, ... BMC genomics 20, 1-21, 2019 | 84 | 2019 |
| Rail-RNA: scalable analysis of RNA-seq splicing and coverage A Nellore, L Collado-Torres, AE Jaffe, J Alquicira-Hernández, C Wilks, ... Bioinformatics 33 (24), 4033-4040, 2017 | 81 | 2017 |
| Flexible expressed region analysis for RNA-seq with derfinder L Collado-Torres, A Nellore, AC Frazee, C Wilks, MI Love, B Langmead, ... Nucleic acids research 45 (2), e9-e9, 2017 | 73 | 2017 |
Andrew E. JaffeVP, Head of Data Sciences, Neumora Therapeutics在 neumoratx.com 的电子邮件经过验证