Climate warming enhances microbial network complexity and stability MM Yuan, X Guo, L Wu, YA Zhang, N Xiao, D Ning, Z Shi, X Zhou, L Wu, ... Nature Climate Change 11 (4), 343-348, 2021 | 1169 | 2021 |
A unified catalog of 204,938 reference genomes from the human gut microbiome A Almeida, S Nayfach, M Boland, F Strozzi, M Beracochea, ZJ Shi, ... Nature biotechnology 39 (1), 105-114, 2021 | 993 | 2021 |
The interconnected rhizosphere: high network complexity dominates rhizosphere assemblages S Shi, EE Nuccio, ZJ Shi, Z He, J Zhou, MK Firestone Ecology letters 19 (8), 926-936, 2016 | 957 | 2016 |
New insights from uncultivated genomes of the global human gut microbiome S Nayfach, ZJ Shi, R Seshadri, KS Pollard, NC Kyrpides Nature 568 (7753), 505-510, 2019 | 667 | 2019 |
Aridity threshold in controlling ecosystem nitrogen cycling in arid and semi-arid grasslands C Wang, X Wang, D Liu, H Wu, X Lü, Y Fang, W Cheng, W Luo, P Jiang, ... Nature communications 5 (1), 4799, 2014 | 357 | 2014 |
Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming K Xue, M M. Yuan, Z J. Shi, Y Qin, YE Deng, L Cheng, L Wu, Z He, ... Nature Climate Change 6 (6), 595-600, 2016 | 350 | 2016 |
Climate warming leads to divergent succession of grassland microbial communities X Guo, J Feng, Z Shi, X Zhou, M Yuan, X Tao, L Hale, T Yuan, J Wang, ... Nature Climate Change 8 (9), 813-818, 2018 | 316 | 2018 |
Efficient genome editing in Clostridium cellulolyticum via CRISPR-Cas9 nickase T Xu, Y Li, Z Shi, CL Hemme, Y Li, Y Zhu, JD Van Nostrand, Z He, J Zhou Applied and environmental microbiology 81 (13), 4423-4431, 2015 | 285 | 2015 |
Oral microbiota of periodontal health and disease and their changes after nonsurgical periodontal therapy C Chen, C Hemme, J Beleno, ZJ Shi, D Ning, Y Qin, Q Tu, M Jorgensen, ... The ISME journal 12 (5), 1210-1224, 2018 | 277 | 2018 |
GeoChip 4: a functional gene‐array‐based high‐throughput environmental technology for microbial community analysis Q Tu, H Yu, Z He, YE Deng, L Wu, JD Van Nostrand, A Zhou, ... Molecular ecology resources 14 (5), 914-928, 2014 | 250 | 2014 |
Soil microbial community responses to a decade of warming as revealed by comparative metagenomics C Luo, LM Rodriguez-R, ER Johnston, L Wu, L Cheng, K Xue, Q Tu, ... Applied and environmental microbiology 80 (5), 1777-1786, 2014 | 172 | 2014 |
Impacts of the Three Gorges Dam on microbial structure and potential function Q Yan, Y Bi, Y Deng, Z He, L Wu, JD Van Nostrand, Z Shi, J Li, X Wang, ... Scientific reports 5 (1), 8605, 2015 | 171 | 2015 |
Disentangling direct from indirect relationships in association networks N Xiao, A Zhou, ML Kempher, BY Zhou, ZJ Shi, M Yuan, X Guo, L Wu, ... Proceedings of the National Academy of Sciences 119 (2), e2109995119, 2022 | 118 | 2022 |
Climate warming accelerates temporal scaling of grassland soil microbial biodiversity X Guo, X Zhou, L Hale, M Yuan, D Ning, J Feng, Z Shi, Z Li, B Feng, ... Nature Ecology & Evolution 3 (4), 612-619, 2019 | 117 | 2019 |
Gene-informed decomposition model predicts lower soil carbon loss due to persistent microbial adaptation to warming X Guo, Q Gao, M Yuan, G Wang, X Zhou, J Feng, Z Shi, L Hale, L Wu, ... Nature communications 11 (1), 4897, 2020 | 114 | 2020 |
Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community J Feng, C Wang, J Lei, Y Yang, Q Yan, X Zhou, X Tao, D Ning, MM Yuan, ... Microbiome 8, 1-12, 2020 | 108 | 2020 |
Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters L Wu, Y Yang, S Chen, Z Jason Shi, M Zhao, Z Zhu, S Yang, Y Qu, Q Ma, ... The ISME journal 11 (12), 2874-2878, 2017 | 91 | 2017 |
Comparative metagenomics reveals impact of contaminants on groundwater microbiomes CL Hemme, Q Tu, Z Shi, Y Qin, W Gao, Y Deng, JDV Nostrand, L Wu, ... Frontiers in microbiology 6, 1205, 2015 | 88 | 2015 |
Bacteriophage–prokaryote dynamics and interaction within anaerobic digestion processes across time and space J Zhang, Q Gao, Q Zhang, T Wang, H Yue, L Wu, J Shi, Z Qin, J Zhou, ... Microbiome 5, 1-10, 2017 | 86 | 2017 |
Diversity and structure of diazotrophic communities in mangrove rhizosphere, revealed by high-throughput sequencing Y Zhang, Q Yang, J Ling, JD Van Nostrand, Z Shi, J Zhou, J Dong Frontiers in Microbiology 8, 2032, 2017 | 83 | 2017 |