| A transformer architecture based on BERT and 2D convolutional neural network to identify DNA enhancers from sequence information NQK Le, QT Ho, TTD Nguyen, YY Ou Briefings in bioinformatics 22 (5), bbab005, 2021 | 153 | 2021 |
| Identifying the molecular functions of electron transport proteins using radial basis function networks and biochemical properties L Nguyen-Quoc-Khanh, N Trinh-Trung-Duong, YY Ou Journal of Molecular Graphics and Modelling 73, 166-178, 2017 | 56 | 2017 |
| A sequence-based prediction of Kruppel-like factors proteins using XGBoost and optimized features NQK Le, DT Do, TTD Nguyen, QA Le Gene 787, 145643, 2021 | 52 | 2021 |
| FAD-BERT: improved prediction of FAD binding sites using pre-training of deep bidirectional transformers QT Ho, NQK Le, YY Ou Computers in Biology and Medicine 131, 104258, 2021 | 49 | 2021 |
| Using word embedding technique to efficiently represent protein sequences for identifying substrate specificities of transporters N Trinh-Trung-Duong, L Nguyen-Quoc-Khanh, H Quang-Thai, ... Analytical Biochemistry, 2019 | 44 | 2019 |
| DeepEfflux: a 2D convolutional neural network model for identifying families of efflux proteins in transporters SW Taju, TTD Nguyen, NQK Le, RMI Kusuma, YY Ou Bioinformatics 34 (18), 3111-3117, 2018 | 39 | 2018 |
| GT-Finder: Classify the family of glucose transporters with pre-trained BERT language models SMA Shah, SW Taju, QT Ho, YY Ou Computers in biology and medicine 131, 104259, 2021 | 35 | 2021 |
| Prediction of ATP-binding sites in membrane proteins using a two-dimensional convolutional neural network TTD N, NQK L, RMI Kusuma, YY Ou Journal of Molecular Graphics and Modelling, 2019 | 34* | 2019 |
| An interpretable deep learning model for classifying adaptor protein complexes from sequence information QH Kha, TO Tran, TTD Nguyen, VN Nguyen, K Than, NQK Le Methods, 2022 | 30 | 2022 |
| Identification of gene expression signatures for psoriasis classification using machine learning techniques NQK Le, DT Do, NTT Duong, NTK Nguyen, TNK Hung, NTT Trang Medicine in Omics, 100001, 2020 | 22 | 2020 |
| An extensive examination of discovering 5-Methylcytosine Sites in Genome-Wide DNA Promoters using machine learning based approaches TA Tran, DM Pham, YY Ou IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (1), 87-94, 2021 | 17 | 2021 |
| TNFPred: Identifying tumor necrosis factors using hybrid features based on word embeddings YYO Trinh-Trung-Duong Nguyen, Nguyen-Quoc-Khanh Le, Quang-Thai Ho, Dinh-Van Phan BMC Medical Genomics, 2020 | 16 | 2020 |
| MFPS_CNN: multi‐filter pattern scanning from position‐specific scoring matrix with convolutional neural network for efficient prediction of ion transporters TTD Nguyen, QT Ho, YC Tarn, YY Ou Molecular Informatics 41 (9), 2100271, 2022 | 11 | 2022 |
| Use Chou's 5-steps rule with different word embedding types to boost performance of electron transport protein prediction model QT Ho, VD Phan, YY Ou IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (2 …, 2020 | 11 | 2020 |
| Addressing data imbalance problems in ligand-binding site prediction using a variational autoencoder and a convolutional neural network TTD Nguyen, DK Nguyen, YY Ou Briefings in Bioinformatics 22 (6), bbab277, 2021 | 10 | 2021 |
| Incorporating a transfer learning technique with amino acid embeddings to efficiently predict N-linked glycosylation sites in ion channels YYO Trinh-Trung-Duong Nguyen, Nguyen-Quoc-Khanh Le, The-Anh Tran, Dinh-Minh Pham Computers in Biology and Medicine, 2021 | 7 | 2021 |
| Using multiple convolutional window scanning of convolutional neural network for an efficient prediction of ATP‐binding sites in transport proteins TTD Nguyen, S Chen, QT Ho, YY Ou Proteins: Structure, Function, and Bioinformatics 90 (7), 1486-1492, 2022 | 5 | 2022 |
| Using language representation learning approach to efficiently identify protein complex categories in electron transport chain TTD Nguyen, NQK Le, QT Ho, DV Phan, YY Ou Molecular Informatics 39 (10), 2000033, 2020 | 4 | 2020 |
| Using k-mer embeddings learned from a Skip-gram based neural network for building a cross-species DNA N6-methyladenine site prediction model TTD Nguyen, VN Trinh, NQK Le, YY Ou Plant Molecular Biology 107 (6), 533-542, 2021 | 3 | 2021 |
| PGxDB: an interactive web-platform for pharmacogenomics research TT Duong Nguyen, Z Tanoli, S Hassan, UO Özcan, J Caroli, AJ Kooistra, ... Nucleic Acids Research 53 (D1), D1486-D1497, 2025 | | 2025 |
Yu-Yen OuProfessor, Department of Computer Science and Engineering, Yuan-Ze University在 saturn.yzu.edu.tw 的电子邮件经过验证