| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 273 | 2022 |
| Dysbiosis in chronic periodontitis: key microbial players and interactions with the human host ZL Deng, SP Szafrański, M Jarek, S Bhuju, I Wagner-Döbler Scientific reports 7 (1), 3703, 2017 | 236 | 2017 |
| The urinary microbiota of men and women and its changes in women during bacterial vaginosis and antibiotic treatment C Gottschick, ZL Deng, M Vital, C Masur, C Abels, DH Pieper, ... Microbiome 5, 1-15, 2017 | 231 | 2017 |
| Co-occurrence analysis of microbial taxa in the Atlantic Ocean reveals high connectivity in the free-living bacterioplankton M Milici, ZL Deng, J Tomasch, J Decelle, ML Wos-Oxley, H Wang, ... Frontiers in microbiology 7, 649, 2016 | 151* | 2016 |
| Stool metatranscriptomics: A technical guideline for mRNA stabilisation and isolation M Reck, J Tomasch, ZL Deng, M Jarek, P Husemann, I Wagner-Döbler BMC genomics 16 (1), 494, 2015 | 102 | 2015 |
| Functional biomarkers for chronic periodontitis and insights into the roles of Prevotella nigrescens and Fusobacterium nucleatum; a metatranscriptome analysis SP Szafrański, ZL Deng, J Tomasch, M Jarek, S Bhuju, C Meisinger, ... npj Biofilms and Microbiomes 1 (1), 1-13, 2015 | 81 | 2015 |
| Rapid and accurate identification of ribosomal RNA sequences via deep learning ZL Deng, PC Münch, R Mreches, AC McHardy Nucleic acids research 50 (10), e60-e60, 2022 | 76 | 2022 |
| Metatranscriptome Analysis of the Vaginal Microbiota Reveals Potential Mechanisms for Protection against Metronidazole in Bacterial Vaginosis ZL Deng, C Gottschick, S Bhuju, C Masur, C Abels, I Wagner-Döbler mSphere 3 (3), 00262-18, 2018 | 75 | 2018 |
| Low diversity of planktonic bacteria in the tropical ocean M Milici, J Tomasch, ML Wos-Oxley, H Wang, R Jáuregui, ... Scientific reports 6 (1), 19054, 2016 | 75 | 2016 |
| The sequencing bias relaxed characteristics of Hi-C derived data and implications for chromatin 3D modeling C Peng, LY Fu, PF Dong, ZL Deng, JX Li, XT Wang, HY Zhang Nucleic acids research 41 (19), e183-e183, 2013 | 70 | 2013 |
| Treatment of biofilms in bacterial vaginosis by an amphoteric tenside pessary-clinical study and microbiota analysis C Gottschick, ZL Deng, M Vital, C Masur, C Abels, DH Pieper, M Rohde, ... Microbiome 5, 1-15, 2017 | 64 | 2017 |
| Worlds apart–transcriptome profiles of key oral microbes in the periodontal pocket compared to single laboratory culture reflect synergistic interactions ZL Deng, H Sztajer, M Jarek, S Bhuju, I Wagner-Döbler Frontiers in Microbiology 9, 124, 2018 | 61 | 2018 |
| Quorum sensing of Streptococcus mutans is activated by Aggregatibacter actinomycetemcomitans and by the periodontal microbiome SP Szafrański, ZL Deng, J Tomasch, M Jarek, S Bhuju, M Rohde, ... BMC genomics 18, 1-15, 2017 | 52 | 2017 |
| Bacterioplankton biogeography of the Atlantic Ocean: a case study of the distance-decay relationship M Milici, J Tomasch, ML Wos-Oxley, J Decelle, R Jáuregui, H Wang, ... Frontiers in Microbiology 7, 590, 2016 | 52 | 2016 |
| Exploring the biologically relevant chemical space for drug discovery ZL Deng, CX Du, X Li, B Hu, ZK Kuang, R Wang, SY Feng, HY Zhang, ... Journal of chemical information and modeling 53 (11), 2820-2828, 2013 | 47 | 2013 |
| Haploflow: strain-resolved de novo assembly of viral genomes A Fritz, A Bremges, ZL Deng, TR Lesker, J Götting, T Ganzenmueller, ... Genome biology 22, 1-19, 2021 | 31 | 2021 |
| Deep sequencing of biofilm microbiomes on dental composite materials G Conrads, LK Wendt, F Hetrodt, ZL Deng, D Pieper, MMH Abdelbary, ... Journal of oral microbiology 11 (1), 1617013, 2019 | 25 | 2019 |
| Construction of a genome-scale metabolic network of the plant pathogen Pectobacterium carotovorum provides new strategies for bactericide discovery C Wang, ZL Deng, ZM Xie, XY Chu, JW Chang, DX Kong, BJ Li, ... FEBS letters 589 (3), 285-294, 2015 | 25 | 2015 |
| RBRDetector: Improved prediction of binding residues on RNA‐binding protein structures using complementary feature‐and template‐based strategies XX Yang, ZL Deng, R Liu Proteins: Structure, Function, and Bioinformatics 82 (10), 2455-2471, 2014 | 24 | 2014 |
| Evaluating assembly and variant calling software for strain-resolved analysis of large DNA-viruses ZL Deng, A Dhingra, A Fritz, J Goetting, P Muench, L Steinbrueck, ... Briefings in Bioinformatics, 2021 | 22 | 2021 |
Irene Wagner-DöblerTechnical University of Braunschweig在 tu-bs.de 的电子邮件经过验证