| Clustal W and Clustal X version 2.0 MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ... bioinformatics 23 (21), 2947-2948, 2007 | 33214 | 2007 |
| Multiple sequence alignments IM Wallace, G Blackshields, DG Higgins Current opinion in structural biology 15 (3), 261-266, 2005 | 171 | 2005 |
| Sequence embedding for fast construction of guide trees for multiple sequence alignment G Blackshields, F Sievers, W Shi, A Wilm, DG Higgins Algorithms for Molecular Biology 5, 1-11, 2010 | 168 | 2010 |
| Coevolution with bacteriophages drives genome-wide host evolution and constrains the acquisition of abiotic-beneficial mutations PD Scanlan, AR Hall, G Blackshields, VP Friman, MR Davis Jr, ... Molecular biology and evolution 32 (6), 1425-1435, 2015 | 128 | 2015 |
| Analysis and comparison of benchmarks for multiple sequence alignment G Blackshields, IM Wallace, M Larkin, DG Higgins In silico biology 6 (4), 321-339, 2006 | 107 | 2006 |
| Wal lace IM, Wilm A., Lopez R., Thompson JD, Gib son TJ, Higgins DG 2007. Clustal W and Clustal X version 2.0 MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ... Bioinformatics 23 (21), 2947-2948, 0 | 102* | |
| A novel serum microRNA panel to discriminate benign from malignant ovarian disease R Langhe, L Norris, FA Saadeh, G Blackshields, R Varley, A Harrison, ... Cancer letters 356 (2), 628-636, 2015 | 98 | 2015 |
| Circular RNAs are differentially expressed in prostate cancer and are potentially associated with resistance to enzalutamide J Greene, AM Baird, O Casey, L Brady, G Blackshields, M Lim, O o’Brien, ... Scientific Reports 9 (1), 10739, 2019 | 84 | 2019 |
| Identifying novel hypoxia-associated markers of chemoresistance in ovarian cancer LM McEvoy, SA O’Toole, CD Spillane, CM Martin, MF Gallagher, ... BMC cancer 15, 1-13, 2015 | 66 | 2015 |
| & Thompson, JD (2007) MA Larkin, G Blackshields, NP Brown, R Chenna, PA McGettigan, ... Clustal W and Clustal X version 2, 2947-2948, 0 | 62 | |
| Evaluating established methods for rumen 16S rRNA amplicon sequencing with mock microbial populations E McGovern, SM Waters, G Blackshields, MS McCabe Frontiers in microbiology 9, 1365, 2018 | 48 | 2018 |
| Ligation of TLR7 on CD19+CD1dhi B cells suppresses allergic lung inflammation via regulatory T cells AR Khan, S Amu, SP Saunders, E Hams, G Blackshields, MO Leonard, ... European journal of immunology 45 (6), 1842-1854, 2015 | 47 | 2015 |
| Peripheral blood microRNA and VEGFA mRNA changes following electroconvulsive therapy: implications for psychotic depression E Kolshus, KM Ryan, G Blackshields, P Smyth, O Sheils, DM McLoughlin Acta Psychiatrica Scandinavica 136 (6), 594-606, 2017 | 46 | 2017 |
| The effect of breed and diet type on the global transcriptome of hepatic tissue in beef cattle divergent for feed efficiency MG Higgins, DA Kenny, C Fitzsimons, G Blackshields, S Coyle, ... BMC genomics 20, 1-11, 2019 | 35 | 2019 |
| Experimental challenge with bovine respiratory syncytial virus in dairy calves: bronchial lymph node transcriptome response D Johnston, B Earley, MS McCabe, K Lemon, C Duffy, M McMenamy, ... Scientific Reports 9 (1), 14736, 2019 | 31 | 2019 |
| Mind the gaps: progress in progressive alignment DG Higgins, G Blackshields, IM Wallace Proceedings of the National Academy of Sciences 102 (30), 10411-10412, 2005 | 26 | 2005 |
| An integrated analysis of the SOX2 microRNA response program in human pluripotent and nullipotent stem cell lines SF Vencken, P Sethupathy, G Blackshields, C Spillane, S Elbaruni, ... BMC genomics 15, 1-16, 2014 | 22 | 2014 |
| Interleukin-15 is associated with disease severity in viral bronchiolitis TR Leahy, R McManus, DG Doherty, R Grealy, T Coulter, P Smyth, ... European Respiratory Journal 47 (1), 212-222, 2015 | 21 | 2015 |
| CD10−/ALDH− cells are the sole cisplatin-resistant component of a novel ovarian cancer stem cell hierarchy B Ffrench, C Gasch, K Hokamp, C Spillane, G Blackshields, TM Mahgoub, ... Cell Death & Disease 8 (10), e3128-e3128, 2017 | 18 | 2017 |
| Transcriptome assisted label free proteomics of hepatic tissue in response to both dietary restriction and compensatory growth in cattle Y Mullins, K Keogh, G Blackshields, DA Kenny, AK Kelly, SM Waters Journal of proteomics 232, 104048, 2021 | 16 | 2021 |
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