Development of a comprehensive genotype-to-fitness map of adaptation-driving mutations in yeast S Venkataram, B Dunn, Y Li, A Agarwala, J Chang, ER Ebel, ... Cell 166 (6), 1585-1596. e22, 2016 | 232 | 2016 |
Single nucleotide mapping of trait space reveals Pareto fronts that constrain adaptation Y Li, DA Petrov, G Sherlock Nature ecology & evolution 3 (11), 1539-1551, 2019 | 76 | 2019 |
Hidden Complexity of Yeast Adaptation under Simple Evolutionary Conditions Y Li, S Venkataram, A Agarwala, B Dunn, DA Petrov, G Sherlock, ... Current Biology 28 (4), 515-525.e6, 2018 | 74 | 2018 |
Anti-CRISPRs go viral: the infection biology of CRISPR-Cas inhibitors Y Li, J Bondy-Denomy Cell host & microbe 29 (5), 704-714, 2021 | 72 | 2021 |
Differential function of the two Atg4 homologues in the aggrephagy pathway in Caenorhabditis elegans F Wu, Y Li, F Wang, NN Noda, H Zhang Journal of Biological Chemistry 287 (35), 29457-29467, 2012 | 60 | 2012 |
Changes in the distribution of fitness effects and adaptive mutational spectra following a single first step towards adaptation D Aggeli, Y Li, G Sherlock Nature Communications 12 (1), 5193, 2021 | 38 | 2021 |
Next-generation proteomics for quantitative Jumbophage-bacteria interaction mapping A Fossati, D Mozumdar, C Kokontis, M Mèndez-Moran, E Nieweglowska, ... Nature Communications 14 (1), 5156, 2023 | 19 | 2023 |
A family of novel immune systems targets early infection of nucleus-forming jumbo phages Y Li, J Guan, S Hareendranath, E Crawford, DA Agard, KS Makarova, ... bioRxiv, 2022.09. 17.508391, 2022 | 15 | 2022 |
Translation-dependent downregulation of Cas12a mRNA by an anti-CRISPR protein ND Marino, A Talaie, H Carion, MC Johnson, Y Zhang, S Silas, Y Li, ... BioRxiv, 2022.11. 29.518452, 2022 | 9 | 2022 |
Evolution of haploid and diploid populations reveals common, strong, and variable pleiotropic effects in non-home environments V Chen, MS Johnson, L Hérissant, PT Humphrey, DC Yuan, Y Li, ... Elife 12, 2023 | 4 | 2023 |
Candida albicans’ inorganic phosphate transport and evolutionary adaptation to phosphate scarcity M Acosta-Zaldívar, W Qi, A Mishra, U Roy, WR King, Y Li, J Patton-Vogt, ... PLoS Genetics 20 (8), e1011156, 2024 | 2 | 2024 |
A shift from pleiotropic to modular adaptation revealed by a high-resolution two-step adaptive walk G Kinsler, Y Li, G Sherlock, DA Petrov bioRxiv, 2024.04. 17.589938, 2024 | 2 | 2024 |
Far From Home: Evolution of haploid and diploid populations reveals common, strong, and variable pleiotropic effects in non-home environments VK Chen, MS Johnson, L Hérissant, PT Humphrey, DC Yuan, Y Li, ... bioRxiv, 2023.02. 28.530341, 2023 | 1 | 2023 |
LSY-2 is essential for maintaining the germ-soma distinction in C. elegans ZH Lin L, Li Y, Yan L, Zhang G, Zhao Y Protein Cell, 599-609, 2015 | 1 | 2015 |
AcrIF11 is a potent CRISPR-specific ADP-ribosyltransferase encoded by phage and plasmid DF Chen, LT Roe, Y Li, AL Borges, JY Zhang, P Babbar, S Maji, ... bioRxiv, 2024 | | 2024 |