Rob Patro

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Carl KingsfordProfessor, Computational Biology Department, School of Computer Science, Carnegie在 cs.cmu.edu 的電子郵件地址已通過驗證
Michael I. LoveAssociate Professor, Biostatistics & Genetics, UNC-Chapel Hill在 email.unc.edu 的電子郵件地址已通過驗證
Geet DuggalPh.D. Student, School of Computer Science, Carnegie Mellon University在 cs.cmu.edu 的電子郵件地址已通過驗證
Avi SrivastavaAssistant Professor, The Wistar Institute在 wistar.org 的電子郵件地址已通過驗證
Hirak SarkarLudwig Scholar at Princeton University在 hms.harvard.edu 的電子郵件地址已通過驗證
Rafael A IrizarryProfessor, Biostatistics and Computational Biology, Dana-Farber and Harvard在 ds.dfci.harvard.edu 的電子郵件地址已通過驗證
Charlotte SonesonResearch Associate, FMI, Basel在 fmi.ch 的電子郵件地址已通過驗證
Fatemeh AlmodaresiPostdoctoral Fellow, Ontario Institute for Cancer Research在 oicr.on.ca 的電子郵件地址已通過驗證
Mohsen ZakeriJohns Hopkins University在 jhu.edu 的電子郵件地址已通過驗證
Prashant PandeyKhoury College of Computer Sciences, Northeastern University在 northeastern.edu 的電子郵件地址已通過驗證
Laraib Iqbal MalikAbbVie在 abbvie.com 的電子郵件地址已通過驗證
Rob JohnsonVMware Research在 vmware.com 的電子郵件地址已通過驗證
Jamshed KhanUniversity of Maryland在 cs.umd.edu 的電子郵件地址已通過驗證
Darya FilippovaHippocraticAI在 hippocraticai.com 的電子郵件地址已通過驗證
Richard Smith-UnnaLabDAO. Formerly @ Resurgo Genetics, Department of Plant Sciences, University of Cambridge在 labdao.com 的電子郵件地址已通過驗證
Chris BoursnellUniversity of Cambridge在 cam.ac.uk 的電子郵件地址已通過驗證
Michael A. BenderStony Brook University在 cs.stonybrook.edu 的電子郵件地址已通過驗證
Amitabh VarshneyDean, College of Computer, Mathematical, and Natural Sciences,Professor of Computer Science在 cs.umd.edu 的電子郵件地址已通過驗證
Steve KellyUniversity of Oxford在 plants.ox.ac.uk 的電子郵件地址已通過驗證
Julian M HibberdDepartment of Plant Sciences, University of Cambridge在 cam.ac.uk 的電子郵件地址已通過驗證

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Rob Patro

Associate Professor, Department of Computer Science, University of Maryland

在 cs.umd.edu 的電子郵件地址已通過驗證 - 首頁

computational biology bioinformatics algorithms cs theory parallel computing


標題按引用次數排序按年份排序按標題排序	引用次數引用次數	年份
Salmon provides fast and bias-aware quantification of transcript expression R Patro, G Duggal, MI Love, RA Irizarry, C Kingsford Nature methods 14 (4), 417-419, 2017	10058	2017
Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018	1238	2018
TransRate: reference-free quality assessment of de novo transcriptome assemblies R Smith-Unna, C Boursnell, R Patro, JM Hibberd, S Kelly Genome research 26 (8), 1134-1144, 2016	812	2016
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms R Patro, SM Mount, C Kingsford Nature biotechnology 32 (5), 462-464, 2014	801	2014
Best practices for single-cell analysis across modalities L Heumos, AC Schaar, C Lance, A Litinetskaya, F Drost, L Zappia, ... Nature Reviews Genetics 24 (8), 550-572, 2023	564	2023
Tximeta: Reference sequence checksums for provenance identification in RNA-seq MI Love, C Soneson, PF Hickey, LK Johnson, NT Pierce, L Shepherd, ... PLoS computational biology 16 (2), e1007664, 2020	266	2020
Global network alignment using multiscale spectral signatures R Patro, C Kingsford Bioinformatics 28 (23), 3105-3114, 2012	255	2012
Identification of alternative topological domains in chromatin D Filippova, R Patro, G Duggal, C Kingsford Algorithms for Molecular Biology 9, 1-11, 2014	251	2014
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data A Srivastava, L Malik, T Smith, I Sudbery, R Patro Genome biology 20, 1-16, 2019	221	2019
A general-purpose counting filter: Making every bit count P Pandey, MA Bender, R Johnson, R Patro Proceedings of the 2017 ACM international conference on Management of Data …, 2017	205	2017
Alignment and mapping methodology influence transcript abundance estimation A Srivastava, L Malik, H Sarkar, M Zakeri, F Almodaresi, C Soneson, ... Genome biology 21, 1-29, 2020	181	2020
RNA sequencing data: hitchhiker's guide to expression analysis K Van den Berge, KM Hembach, C Soneson, S Tiberi, L Clement, MI Love, ... Annual Review of Biomedical Data Science 2 (1), 139-173, 2019	165	2019
RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes A Srivastava, H Sarkar, N Gupta, R Patro Bioinformatics 32 (12), i192-i200, 2016	142	2016
Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification MI Love, C Soneson, R Patro F1000Research 7, 2018	141	2018
Mantis: a fast, small, and exact large-scale sequence-search index P Pandey, F Almodaresi, MA Bender, M Ferdman, R Johnson, R Patro Cell systems 7 (2), 201-207. e4, 2018	125	2018
Squeakr: an exact and approximate k-mer counting system P Pandey, MA Bender, R Johnson, R Patro Bioinformatics 34 (4), 568-575, 2018	115	2018
Nonparametric expression analysis using inferential replicate counts A Zhu, A Srivastava, JG Ibrahim, R Patro, MI Love Nucleic Acids Research 47 (18), e105-e105, 2019	106	2019
Maximum likelihood estimation of biological relatedness from low coverage sequencing data M Lipatov, K Sanjeev, R Patro, KR Veeramah BioRxiv, 023374, 2015	104	2015
A space and time-efficient index for the compacted colored de Bruijn graph F Almodaresi, H Sarkar, A Srivastava, R Patro Bioinformatics 34 (13), i169-i177, 2018	97	2018
Salmon provides accurate, fast, and bias-aware transcript expression estimates using dual-phase inference R Patro, G Duggal, MI Love, RA Irizarry, C Kingsford BioRxiv, 021592, 2015	80	2015

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