Genomic selection in plant breeding: Key factors sha** two decades of progress

A Alemu, J Åstrand, OA Montesinos-Lopez… - Molecular Plant, 2024‏ - cell.com
Genomic selection, the application of genomic prediction (GP) models to select candidate
individuals, has significantly advanced in the past two decades, effectively accelerating …

Recent advances in sugarcane genomics, physiology, and phenomics for superior agronomic traits

MR Meena, C Appunu, R Arun Kumar… - Frontiers in …, 2022‏ - frontiersin.org
Advances in sugarcane breeding have contributed significantly to improvements in
agronomic traits and crop yield. However, the growing global demand for sugar and biofuel …

Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning …

G Hoopes, X Meng, JP Hamilton, SR Achakkagari… - Molecular plant, 2022‏ - cell.com
Cultivated potato is a clonally propagated autotetraploid species with a highly
heterogeneous genome. Phased assemblies of six cultivars including two chromosome …

AGHmatrix: genetic relationship matrices in R

RR Amadeu, AAF Garcia, PR Munoz… - Bioinformatics, 2023‏ - academic.oup.com
Motivation The resemble between relatives computed from pedigree and genomic data is an
important resource for geneticists and ecologists, who are interested in understanding how …

Accelerating genetic gain in sugarcane breeding using genomic selection

S Yadav, P Jackson, X Wei, EM Ross, K Aitken… - Agronomy, 2020‏ - mdpi.com
Sugarcane is a major industrial crop cultivated in tropical and subtropical regions of the
world. It is the primary source of sugar worldwide, accounting for more than 70% of world …

Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species

LM Zingaretti, SA Gezan, LFV Ferrão… - Frontiers in plant …, 2020‏ - frontiersin.org
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates
are predicted using genome wide marker information. Although numerous examples of GP …

Optimizing hatchery practices for genetic improvement of marine bivalves

JC Nascimento‐Schulze, TP Bean… - Reviews in …, 2021‏ - Wiley Online Library
Aquaculture currently accounts for approximately half of all seafood produced and is the
fastest growing farmed food sector globally. Marine bivalve aquaculture, the farming of …

The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment

AR Rogers, JC Dunne, C Romay, M Bohn, ES Buckler… - G3, 2021‏ - academic.oup.com
High-dimensional and high-throughput genomic, field performance, and environmental data
are becoming increasingly available to crop breeding programs, and their integration can …

Genetic and genomic resources for Rubus breeding: a roadmap for the future

TM Foster, NV Bassil, M Dossett… - Horticulture …, 2019‏ - academic.oup.com
Rubus fruits are high-value crops that are sought after by consumers for their flavor, visual
appeal, and health benefits. To meet this demand, production of red and black raspberries …

The application of pangenomics and machine learning in genomic selection in plants

PE Bayer, J Petereit, MF Danilevicz… - The Plant …, 2021‏ - Wiley Online Library
Genomic selection approaches have increased the speed of plant breeding, leading to
growing crop yields over the last decade. However, climate change is impacting current and …