Codon optimality, bias and usage in translation and mRNA decay
G Hanson, J Coller - Nature reviews Molecular cell biology, 2018 - nature.com
The advent of ribosome profiling and other tools to probe mRNA translation has revealed
that codon bias—the uneven use of synonymous codons in the transcriptome—serves as a …
that codon bias—the uneven use of synonymous codons in the transcriptome—serves as a …
On the dependency of cellular protein levels on mRNA abundance
The question of how genomic information is expressed to determine phenotypes is of central
importance for basic and translational life science research and has been studied by …
importance for basic and translational life science research and has been studied by …
Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics
K Leppek, GW Byeon, W Kladwang… - Nature …, 2022 - nature.com
Therapeutic mRNAs and vaccines are being developed for a broad range of human
diseases, including COVID-19. However, their optimization is hindered by mRNA instability …
diseases, including COVID-19. However, their optimization is hindered by mRNA instability …
mRNA structure regulates protein expression through changes in functional half-life
Messenger RNAs (mRNAs) encode information in both their primary sequence and their
higher order structure. The independent contributions of factors like codon usage and …
higher order structure. The independent contributions of factors like codon usage and …
Ribosome levels selectively regulate translation and lineage commitment in human hematopoiesis
Blood cell formation is classically thought to occur through a hierarchical differentiation
process, although recent studies have shown that lineage commitment may occur earlier in …
process, although recent studies have shown that lineage commitment may occur earlier in …
Codon bias as a means to fine-tune gene expression
The redundancy of the genetic code implies that most amino acids are encoded by multiple
synonymous codons. In all domains of life, a biased frequency of synonymous codons is …
synonymous codons. In all domains of life, a biased frequency of synonymous codons is …
Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
Post-transcriptional modification of RNA nucleosides occurs in all living organisms.
Pseudouridine, the most abundant modified nucleoside in non-coding RNAs, enhances the …
Pseudouridine, the most abundant modified nucleoside in non-coding RNAs, enhances the …
Synonymous but not silent: the codon usage code for gene expression and protein folding
Codon usage bias, the preference for certain synonymous codons, is found in all genomes.
Although synonymous mutations were previously thought to be silent, a large body of …
Although synonymous mutations were previously thought to be silent, a large body of …
The organizing principles of eukaryotic ribosome recruitment
J Pelletier, N Sonenberg - Annual review of biochemistry, 2019 - annualreviews.org
The stage at which ribosomes are recruited to messenger RNAs (mRNAs) is an elaborate
and highly regulated phase of protein synthesis. Upon completion of this step, a ribosome is …
and highly regulated phase of protein synthesis. Upon completion of this step, a ribosome is …