Mendelian randomization as a tool for cardiovascular research: a review

MG Levin, S Burgess - JAMA cardiology, 2024 - jamanetwork.com
Importance Mendelian randomization (MR) is a statistical approach that has become
increasingly popular in the field of cardiovascular disease research. It offers a way to infer …

Pleiotropy, epistasis and the genetic architecture of quantitative traits

TFC Mackay, RRH Anholt - Nature Reviews Genetics, 2024 - nature.com
Pleiotropy (whereby one genetic polymorphism affects multiple traits) and epistasis
(whereby non-linear interactions between genetic polymorphisms affect the same trait) are …

MetaboAnalyst 6.0: towards a unified platform for metabolomics data processing, analysis and interpretation

Z Pang, Y Lu, G Zhou, F Hui, L Xu, C Viau… - Nucleic acids …, 2024 - academic.oup.com
We introduce MetaboAnalyst version 6.0 as a unified platform for processing, analyzing, and
interpreting data from targeted as well as untargeted metabolomics studies using liquid …

Spatially resolved multiomics of human cardiac niches

K Kanemaru, J Cranley, D Muraro, AMA Miranda… - Nature, 2023 - nature.com
The function of a cell is defined by its intrinsic characteristics and its niche: the tissue
microenvironment in which it dwells. Here we combine single-cell and spatial …

Genome-wide characterization of circulating metabolic biomarkers

MK Karjalainen, S Karthikeyan, C Oliver-Williams… - Nature, 2024 - nature.com
Genome-wide association analyses using high-throughput metabolomics platforms have led
to novel insights into the biology of human metabolism,,,,,–. This detailed knowledge of the …

Refining the impact of genetic evidence on clinical success

EV Minikel, JL Painter, CC Dong, MR Nelson - Nature, 2024 - nature.com
The cost of drug discovery and development is driven primarily by failure, with only about
10% of clinical programmes eventually receiving approval,–. We previously estimated that …

Enrichr-KG: bridging enrichment analysis across multiple libraries

JE Evangelista, Z **e, GB Marino… - Nucleic acids …, 2023 - academic.oup.com
Gene and protein set enrichment analysis is a critical step in the analysis of data collected
from omics experiments. Enrichr is a popular gene set enrichment analysis web-server …

ChIP-Atlas 3.0: a data-mining suite to explore chromosome architecture together with large-scale regulome data

Z Zou, T Ohta, S Oki - Nucleic Acids Research, 2024 - academic.oup.com
Abstract ChIP-Atlas (https://chip-atlas. org/) presents a suite of data-mining tools for
analyzing epigenomic landscapes, powered by the comprehensive integration of over 376 …

Ensembl 2024

PW Harrison, MR Amode… - Nucleic acids …, 2024 - academic.oup.com
Abstract Ensembl (https://www. ensembl. org) is a freely available genomic resource that has
produced high-quality annotations, tools, and services for vertebrates and model organisms …

Inferring gene regulatory networks from single-cell multiome data using atlas-scale external data

Q Yuan, Z Duren - Nature Biotechnology, 2024 - nature.com
Existing methods for gene regulatory network (GRN) inference rely on gene expression data
alone or on lower resolution bulk data. Despite the recent integration of chromatin …